Evidence map›Paper›PMID 27487946›Full record

ArticleBMC genomics2016

Evolutionary and functional analysis of mulberry type III polyketide synthases.

Han Li, Jiubo Liang, Hu Chen, Guangyu Ding, Bi Ma, Ningjia He

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Abnormal expression ofHorticulture research · 2020
    Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Han LiState Key Laboratory of Silkworm Genome Biology, Southwest University, Beibei, Chongqing, 400715, People's Republic of China.
Jiubo LiangState Key Laboratory of Silkworm Genome Biology, Southwest University, Beibei, Chongqing, 400715, People's Republic of China.
Hu ChenState Key Laboratory of Silkworm Genome Biology, Southwest University, Beibei, Chongqing, 400715, People's Republic of China.
Guangyu DingState Key Laboratory of Silkworm Genome Biology, Southwest University, Beibei, Chongqing, 400715, People's Republic of China.
Bi MaState Key Laboratory of Silkworm Genome Biology, Southwest University, Beibei, Chongqing, 400715, People's Republic of China.
Ningjia HeState Key Laboratory of Silkworm Genome Biology, Southwest University, Beibei, Chongqing, 400715, People's Republic of China. hejia@swu.edu.cn.ORCID 0000-0002-7322-7113
Southwest University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundType III polyketide synthases are important for the biosynthesis of flavonoids and various plant polyphenols. Mulberry plants have abundant polyphenols, but very little is known about the mulberry type III polyketide synthase genes. An analysis of these genes may provide new targets for genetic improvement to increase relevant secondary metabolites and enhance the plant tolerance to biotic and abiotic stresses.

resultsEighteen genes encoding type III polyketide synthases were identified, including six chalcone synthases (CHS), ten stilbene synthases (STS), and two polyketide synthases (PKS). Functional characterization of four genes representing most of the MnCHS and MnSTS genes by coexpression with 4-Coumaroyl-CoA ligase in Escherichia coli indicated that their products were able to catalyze p-coumaroyl-CoA and malonyl-CoA to generate naringenin and resveratrol, respectively. Microsynteny analysis within mulberry indicated that segmental and tandem duplication events contributed to the expansion of the MnCHS family, while tandem duplications were mainly responsible for the generation of the MnSTS genes. Combining the evolution and expression analysis results of the mulberry type III PKS genes indicated that MnCHS and MnSTS genes evolved mainly under purifying selection to maintain their original functions, but transcriptional subfunctionalization occurred during long-term species evolution. Moreover, mulberry leaves can rapidly accumulated oxyresveratrol after UV-C irradiation, suggesting that resveratrol was converted to oxyresveratrol.

conclusionsCharacterizing the functions and evolution of mulberry type III PKS genes is crucial for advancing our understanding of these genes and providing the basis for further studies on the biosynthesis of relevant secondary metabolites in mulberry plants.

Indexed as

Biological EvolutionAcyltransferasesBiosynthetic PathwaysCluster AnalysisGene Expression Regulation, PlantModels, MolecularMorusMultigene FamilyOpen Reading FramesOrgan SpecificityPhylogenyProtein ConformationStilbenesUltraviolet RaysAcyltransferasesflavanone synthetaseStilbenesChalcone synthaseEvolutionary analysisFunctional analysisGene expressionMulberryStilbene synthase

Identifiers

PMID27487946
PMCPMC4973071
OpenAlexW2488942057

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.