Evidence map›Paper›PMID 27487922›Full record

ArticleActa crystallographica. Section F, Structural biology communications2016

Malonate in the nucleotide-binding site traps human AKAP18γ/δ in a novel conformational state.

Kaare Bjerregaard-Andersen, Ellen Østensen, John D Scott, Kjetil Taskén, Jens Preben Morth

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Single nucleotide polymorphisms alter kinase anchoring and the subcellular targeting of A-kinase anchoring proteins.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Kaare Bjerregaard-AndersenCentre for Molecular Medicine Norway, University of Oslo, PO Box 1137, N-0318 Oslo, Norway.
Ellen ØstensenBiotechnology Centre, University of Oslo, PO Box 1137, N-0318 Oslo, Norway.
John D ScottHoward Hughes Medical Institute and Department of Pharmacology, University of Washington, PO Box 357370, Seattle, WA 98195, USA.
Kjetil TaskénCentre for Molecular Medicine Norway, University of Oslo, PO Box 1137, N-0318 Oslo, Norway.
Jens Preben MorthCentre for Molecular Medicine Norway, University of Oslo, PO Box 1137, N-0318 Oslo, Norway.
University of Oslo · NOHoward Hughes Medical Institute · US

Funding

Project# 4: INTERACTIONS OF ANCHORING PROTEINS WITH THEIR TARGETSP01DK054441 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, SUSAN S. · 1999 to 2017
$27.3M
Local Signaling in Diabetic ComorbiditiesR01DK105542 · NIDDK · UNIVERSITY OF WASHINGTON · PI SCOTT, JOHN D · 2015 to 2018
$1.4M
NIDDK NIH HHS P01 DK054441NIDDK NIH HHS R01 DK105542
6 · The paper itself

Abstract

A-kinase anchoring proteins (AKAPs) are a family of proteins that provide spatiotemporal resolution of protein kinase A (PKA) phosphorylation. In the myocardium, PKA and AKAP18γ/δ are found in complex with sarcoendoplasmic reticulum Ca(2+)-ATPase 2 (SERCA2) and phospholamban (PLB). This macromolecular complex provides a means by which anchored PKA can dynamically regulate cytoplasmic Ca(2+) release and re-uptake. For this reason, AKAP18γ/δ presents an interesting drug target with therapeutic potential in cardiovascular disease. The crystal structure of the central domain of human AKAP18γ has been determined at the atomic resolution of 1.25 Å. This first structure of human AKAP18γ is trapped in a novel conformation by a malonate molecule bridging the important R-loop with the 2H phosphoesterase motif. Although the physiological substrate of AKAP18γ is currently unknown, a potential proton wire deep in the central binding crevice has been indentified, leading to bulk solvent below the R-loop. Malonate complexed with AKAP18γ at atomic resolution provides an excellent starting point for structure-guided drug design.

Indexed as

A Kinase Anchor ProteinsAmino Acid SequenceAnimalsBinding SitesCloning, MolecularCrystallography, X-RayEndopeptidasesEscherichia coliGene ExpressionHumansMalonatesMembrane ProteinsModels, MolecularPlasmidsProtein BindingProtein Conformation, alpha-HelicalAKAP7 protein, humanA Kinase Anchor ProteinsEndopeptidasesMalonatesmalonic acidMembrane ProteinsProtein IsoformsRecombinant Fusion ProteinsTEV proteaseAKAPAKAP7A-kinase anchoring proteindrug designphospholambanPKAproton wiresignalling

Identifiers

PMID27487922
PMCPMC4973299
OpenAlexW2474555473

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.