ArticleActa crystallographica. Section D, Structural biology2016
TakeTwo: an indexing algorithm suited to still images with known crystal parameters.
Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Serial Chemical Crystallography for Autonomous Quantitative Phase Analysis in an Electron Microscope.Small methods · 2025Article
- Functional implications of hexameric dynamics in SARS-CoV-2 Nsp15.Protein science : a publication of the Protein Society · 2025Article
- GARFIELD, a toolkit for interpreting ultrafast electron diffraction data of imperfect quasi-single crystals.Structural dynamics (Melville, N.Y.) · 2025Article
- Application of signal separation to diffraction image compression and serial crystallography.Journal of applied crystallography · 2025Article
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- 3D Nanocrystallography and the Imperfect Molecular Lattice.Annual review of physical chemistry · 2024Review
- A streamlined approach to structure elucidation using in cellulo crystallized recombinant proteins, InCellCryst.Nature communications · 2024Article
- Optical control of ultrafast structural dynamics in a fluorescent protein.Nature chemistry · 2023Article
- Article
- Megahertz pulse trains enable multi-hit serial femtosecond crystallography experiments at X-ray free electron lasers.Nature communications · 2022Article
- De novo determination of mosquitocidal Cry11Aa and Cry11Ba structures from naturally-occurring nanocrystals.Nature communications · 2022Article
- Serial Electron Diffraction Data Processing With diffractem and CrystFEL.Frontiers in molecular biosciences · 2021Article
- Instrument-model refinement in normalized reciprocal-vector space for X-ray Laue diffraction.Journal of applied crystallography · 2020Article
- Article
- Pattern-matching indexing of Laue and monochromatic serial crystallography data for applications in materials science.Journal of applied crystallography · 2020Article
- Molecular mechanism of light-driven sodium pumping.Nature communications · 2020Article
- SPIND-TC: an indexing method for two-color X-ray diffraction data.Acta crystallographica. Section A, Foundations and advances · 2020Article
- pinkIndexer - a universal indexer for pink-beam X-ray and electron diffraction snapshots.Acta crystallographica. Section A, Foundations and advances · 2020Article
- XGANDALF - extended gradient descent algorithm for lattice finding.Acta crystallographica. Section A, Foundations and advances · 2019Article
- An outlook on using serial femtosecond crystallography in drug discovery.Expert opinion on drug discovery · 2019Review
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10 authors.
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Abstract
The indexing methods currently used for serial femtosecond crystallography were originally developed for experiments in which crystals are rotated in the X-ray beam, providing significant three-dimensional information. On the other hand, shots from both X-ray free-electron lasers and serial synchrotron crystallography experiments are still images, in which the few three-dimensional data available arise only from the curvature of the Ewald sphere. Traditional synchrotron crystallography methods are thus less well suited to still image data processing. Here, a new indexing method is presented with the aim of maximizing information use from a still image given the known unit-cell dimensions and space group. Efficacy for cubic, hexagonal and orthorhombic space groups is shown, and for those showing some evidence of diffraction the indexing rate ranged from 90% (hexagonal space group) to 151% (cubic space group). Here, the indexing rate refers to the number of lattices indexed per image.
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