Evidence map›Paper›PMID 27487825›Full record

ArticleActa crystallographica. Section D, Structural biology2016

Fixed target combined with spectral mapping: approaching 100% hit rates for serial crystallography.

Saeed Oghbaey, Antoine Sarracini, Helen M Ginn, Olivier Pare-Labrosse, Anling Kuo, Alexander Marx, Sascha W Epp, Darren A Sherrell, Bryan T Eger, Yinpeng Zhong and 11 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Article
  2. Article
  3. Microfluidic Devices for High-Throughput In Situ Serial Crystallography.Advances in biochemical engineering/biotechnology · 2026
    Review
  4. Review
  5. Article
  6. Review
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  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. A standard descriptor for fixed-target serial crystallography.Acta crystallographica. Section D, Structural biology · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Serial femtosecond crystallography.Nature reviews. Methods primers · 2022
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Saeed OghbaeyDepartment of Physics and Chemistry, University of Toronto, 60 St George Street, Toronto, ON M5S 1A7, Canada.
Antoine SarraciniDepartment of Physics and Chemistry, University of Toronto, 60 St George Street, Toronto, ON M5S 1A7, Canada.
Helen M GinnDivision of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, England.
Olivier Pare-LabrosseDepartment of Physics and Chemistry, University of Toronto, 60 St George Street, Toronto, ON M5S 1A7, Canada.
Anling KuoDepartment of Biochemistry, University of Toronto, 1 King's College Circle, Toronto, Ontario, Canada.
Alexander MarxAtomically Resolved Dynamics, Max-Planck-Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, Hamburg, Germany.
Sascha W EppAtomically Resolved Dynamics, Max-Planck-Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, Hamburg, Germany.
Darren A SherrellDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 ODE, England.
Bryan T EgerDepartment of Biochemistry, University of Toronto, 1 King's College Circle, Toronto, Ontario, Canada.
Yinpeng ZhongAtomically Resolved Dynamics, Max-Planck-Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, Hamburg, Germany.
Rolf LochAtomically Resolved Dynamics, Max-Planck-Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, Hamburg, Germany.
Valerio MarianiCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Roberto Alonso-MoriSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.
Silke NelsonSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.
Henrik T LemkeSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.
Robin L OwenDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 ODE, England.
Arwen R PearsonHamburg Centre for Ultrafast Imaging, University of Hamburg, Hamburg, Germany.
David I StuartDivision of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, England.
Oliver P ErnstDepartment of Biochemistry, University of Toronto, 1 King's College Circle, Toronto, Ontario, Canada.
Henrike M Mueller-WerkmeisterDepartment of Physics and Chemistry, University of Toronto, 60 St George Street, Toronto, ON M5S 1A7, Canada.
R J Dwayne MillerDepartment of Physics and Chemistry, University of Toronto, 60 St George Street, Toronto, ON M5S 1A7, Canada.

Funding

Medical Research Council G1100525Medical Research Council G19/3Medical Research Council MR/N00065X/1Wellcome Trust 102597
6 · The paper itself

Abstract

The advent of ultrafast highly brilliant coherent X-ray free-electron laser sources has driven the development of novel structure-determination approaches for proteins, and promises visualization of protein dynamics on sub-picosecond timescales with full atomic resolution. Significant efforts are being applied to the development of sample-delivery systems that allow these unique sources to be most efficiently exploited for high-throughput serial femtosecond crystallography. Here, the next iteration of a fixed-target crystallography chip designed for rapid and reliable delivery of up to 11 259 protein crystals with high spatial precision is presented. An experimental scheme for predetermining the positions of crystals in the chip by means of in situ spectroscopy using a fiducial system for rapid, precise alignment and registration of the crystal positions is presented. This delivers unprecedented performance in serial crystallography experiments at room temperature under atmospheric pressure, giving a raw hit rate approaching 100% with an effective indexing rate of approximately 50%, increasing the efficiency of beam usage and allowing the method to be applied to systems where the number of crystals is limited.

Indexed as

AnimalsCrystallizationCrystallography, X-RayEquipment DesignMyoglobinProteinsSperm WhaleTemperatureTime FactorsMyoglobinProteinsfemtosecond time-resolved crystallographyfixed-target sample deliveryhigh-throughput serial crystallographyroom-temperature crystallography

Identifiers

PMID27487825
PMCPMC5937680

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.