Evidence map›Paper›PMID 27486979›Full record

ArticleOncotarget2016

Functional single nucleotide polymorphisms within the cyclin-dependent kinase inhibitor 2A/2B region affect pancreatic cancer risk.

Daniele Campa, Manuela Pastore, Manuel Gentiluomo, Renata Talar-Wojnarowska, Juozas Kupcinskas, Ewa Malecka-Panas, John P Neoptolemos, Willem Niesen, Pavel Vodicka, Gianfranco Delle Fave and 51 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it, 56 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  15. Genetic Susceptibility in Understanding of Pancreatic Ductal Adenocarcinoma Risk: A Decade-Long Effort of the PANDORA Consortium.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

61 authors at 20 institutions in 10 countries.

Daniele CampaDepartment of Biology, University of Pisa, Pisa, Italy.
Manuela PastoreDepartment of Biology, University of Pisa, Pisa, Italy.
Manuel GentiluomoDepartment of Biology, University of Pisa, Pisa, Italy.
Renata Talar-WojnarowskaDepartment of Digestive Tract Diseases, Medical University of Lodz, Lodz, Poland.
Juozas KupcinskasDepartment of Gastroenterology, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Ewa Malecka-PanasDepartment of Digestive Tract Diseases, Medical University of Lodz, Lodz, Poland.
John P NeoptolemosInstitute for Health Research Liverpool Pancreas Biomedical Research Unit, University of Liverpool, Liverpool, United Kingdom.
Willem NiesenDepartment of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Pavel VodickaInstitute of Experimental Medicine, Czech Academy of Science, Prague, Czech Republic.
Gianfranco Delle FaveDigestive and Liver Disease Unit, S. Andrea Hospital, 'Sapienza' University of Rome, Rome, Italy.
H Bas Bueno-de-MesquitaDepartment for Determinants of Chronic Diseases (DCD), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Maria GazouliDepartment of Basic Medical Sciences, Laboratory of Biology, Medical School, National and Kapodistrian University of Athens, Athens, Greece.
Paola PacettiOncological Department Massa Carrara Azienda USL Toscana Nord Ovest, Carrara, Italy.
Milena Di LeoGastroenterology and Gastrointestinal Endoscopy Unit, Vita-Salute San Raffaele University, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Hidemi ItoDivision Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya, Japan.
Harald KlüterInstitute of Transfusion Medicine and Immunology, German Red Cross Blood Service Baden-Württemberg - Hessen gGmbH, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Pavel SoucekLaboratory of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic.
Vincenzo CorboARC-Net Research Centre, and Department of Diagnostics and Public Health University and Hospital Trust of Verona, Verona, Italy.
Kenji YamaoDepartment of Gastroenterology, Aichi Cancer Center Hospital, Nagoya, Japan.
Satoyo HosonoDivision Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya, Japan.
Rudolf KaaksDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Yogesh VashistDepartment of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Domenica GioffredaDivision of Gastroenterology and Research Laboratory, IRCCS Scientific Institute and Regional General Hospital "Casa Sollievo della Sofferenza", San Giovanni Rotondo, Italy.
Oliver StrobelDepartment of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Yasuhiro ShimizuDepartment of Gastroenterological Surgery, Aichi Cancer Center Hospital, Nagoya, Japan.
Frederike DijkDepartment of Pathology, Academic Medical Centre, Amsterdam, The Netherlands.
Angelo AndriulliDivision of Gastroenterology and Research Laboratory, IRCCS Scientific Institute and Regional General Hospital "Casa Sollievo della Sofferenza", San Giovanni Rotondo, Italy.
Audrius IvanauskasDepartment of Gastroenterology, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Peter BugertInstitute of Transfusion Medicine and Immunology, German Red Cross Blood Service Baden-Württemberg - Hessen gGmbH, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Francesca TavanoDivision of Gastroenterology and Research Laboratory, IRCCS Scientific Institute and Regional General Hospital "Casa Sollievo della Sofferenza", San Giovanni Rotondo, Italy.
Ludmila VodickovaInstitute of Biology and Medical Genetics, 1st Medical Faculty, Charles University, Prague, Czech Republic.
Carlo Federico ZambonDepartment of Medicine - DIMED, University of Padova, Padova, Italy.
Martin LovecekDepartment of Surgery I, Faculty of Medicine and Dentistry, Palacky University Olomouc and University Hospital Olomouc, Olomouc, Czech Republic.
Stefano LandiDepartment of Biology, University of Pisa, Pisa, Italy.
Timothy J KeyEpidemiology Unit Nuffield Department of Population Health University of Oxford, Oxford, UK.
Ugo BoggiDivision of General and Transplant Surgery, Pisa University Hospital, Pisa, Italy.
Raffaele PezzilliPancreas Unit, Department of Digestive System, Dant'Orsola-Malpighi Hospital, Bologna, Italy.
Krzysztof JamroziakDepartment of Hematology, Institute of Hematology and Transfusion Medicine, Warsaw, Poland.
Beatrice Mohelnikova-DuchonovaLaboratory of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic.
Andrea MambriniOncological Department Massa Carrara Azienda USL Toscana Nord Ovest, Carrara, Italy.
Franco BambiBlood Transfusion Service, Azienda Ospedaliero Universitaria Meyer, Florence, Italy.
Olivier BuschDepartment of Surgery, Academic Medical Centre, Amsterdam, The Netherlands.
Valerio PazienzaDivision of Gastroenterology and Research Laboratory, IRCCS Scientific Institute and Regional General Hospital "Casa Sollievo della Sofferenza", San Giovanni Rotondo, Italy.
Roberto ValenteDigestive and Liver Disease Unit, S. Andrea Hospital, 'Sapienza' University of Rome, Rome, Italy.
George E TheodoropoulosColorectal Unit, First Department of Propaedeutic Surgery, Athens Medical School, National and Kapodistrian University of Athens, Athens, Greece.
Thilo HackertDepartment of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Gabriele CapursoDigestive and Liver Disease Unit, S. Andrea Hospital, 'Sapienza' University of Rome, Rome, Italy.
Giulia Martina CavestroGastroenterology and Gastrointestinal Endoscopy Unit, Vita-Salute San Raffaele University, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Claudio PasqualiDepartment of Surgery, Oncology and Gastroenterology-DiSCOG, University of Padova, Padova, Italy.
Daniela BassoDepartment of Laboratory Medicine, University-Hospital of Padova, Padova, Italy.
Cosimo SpertiDepartment of Surgery, Oncology and Gastroenterology-DiSCOG, University of Padova, Padova, Italy.
Keitaro MatsuoDivision of Molecular Medicine, Aichi Cancer Center Research Institute, Nagoya, Japan.
Markus BüchlerDepartment of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Kay-Tee KhawClinical Gerontology Unit, Addenbrooke’s Hospital, School of Clinical Medicine, University of Cambridge, Cambridge, UK.
Jakob IzbickiDepartment of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Eithne CostelloInstitute for Health Research Liverpool Pancreas Biomedical Research Unit, University of Liverpool, Liverpool, United Kingdom.
Verena KatzkeDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Christoph MichalskiDepartment of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Anna StepienLaboratory of Clinical, Transplant Immunology and Genetics, Copernicus Memorial Hospital, Lodz, Poland.
Cosmeri RizzatoDepartment of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.
Federico CanzianGenomic Epidemiology Group, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Heidelberg University · DEAichi Cancer Center · JPUniversity of Padua · ITCasa Sollievo della Sofferenza · ITGerman Cancer Research Center · DESapienza University of Rome · ITAcademic Medical Center · NLAzienda Usl Toscana Centro · ITCharles University · CZIstituti di Ricovero e Cura a Carattere Scientifico · ITLithuanian University of Health Sciences · LTMedical University of Lodz · PLNational and Kapodistrian University of Athens · GRNational Institute of Public Health · CZUniversity of Liverpool · GBUniversity of Pisa · ITAddenbrooke's Hospital · GBCopernicus Memorial Hospital · PLGerman Red Cross · DEInstytut Hematologii i Transfuzjologi · PL

Funding

Cancer Research UK 14136Cancer Research UK 15957Cancer Research UK 16491Cancer Research UK 8968Department of Health PB-PG-0407-13363Medical Research Council G0401527Medical Research Council G1000143Medical Research Council MR/N003284/1
6 · The paper itself

Abstract

The CDKN2A (p16) gene plays a key role in pancreatic cancer etiology. It is one of the most commonly somatically mutated genes in pancreatic cancer, rare germline mutations have been found to be associated with increased risk of developing familiar pancreatic cancer and CDKN2A promoter hyper-methylation has been suggested to play a critical role both in pancreatic cancer onset and prognosis. In addition several unrelated SNPs in the 9p21.3 region, that includes the CDNK2A, CDNK2B and the CDNK2B-AS1 genes, are associated with the development of cancer in various organs. However, association between the common genetic variability in this region and pancreatic cancer risk is not clearly understood. We sought to fill this gap in a case-control study genotyping 13 single nucleotide polymorphisms (SNPs) in 2,857 pancreatic ductal adenocarcinoma (PDAC) patients and 6,111 controls in the context of the Pancreatic Disease Research (PANDoRA) consortium. We found that the A allele of the rs3217992 SNP was associated with an increased pancreatic cancer risk (ORhet=1.14, 95% CI 1.01-1.27, p=0.026, ORhom=1.30, 95% CI 1.12-1.51, p=0.00049). This pleiotropic variant is reported to be a mir-SNP that, by changing the binding site of one or more miRNAs, could influence the normal cell cycle progression and in turn increase PDAC risk. In conclusion, we observed a novel association in a pleiotropic region that has been found to be of key relevance in the susceptibility to various types of cancer and diabetes suggesting that the CDKN2A/B locus could represent a genetic link between diabetes and pancreatic cancer risk.

Indexed as

Polymorphism, Single NucleotideAllelesAsian PeopleBinding SitesCarcinoma, Pancreatic DuctalCase-Control StudiesCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Cyclin-Dependent Kinase Inhibitor p18Disease ProgressionDNA MethylationGenetic Predisposition to DiseaseGenotypeGerm-Line MutationHumansInternational CooperationCDKN2A protein, humanCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Cyclin-Dependent Kinase Inhibitor p18association studyCDKN2AmiRSNPpancreatic cancersingle nucleotide polymorphisms

Identifiers

PMID27486979
PMCPMC5302969
OpenAlexW2503043038

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.