ArticlePloS one2016
Transcriptome Analysis of Storage Roots and Fibrous Roots of the Traditional Medicinal Herb Callerya speciosa (Champ.) ScHot.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Coordinated Cell-Wall and Starch Maturation Is Associated with Winter-Harvest Quality inInternational journal of molecular sciences · 2026Article
- StSP6A: a key regulator integrating multiple signals for potato tuber formation.Plant cell reports · 2026Review
- Multi-omics profiling of Nanhaia speciosa and Nanhaia fordii: insights into lectin dynamics, nodulation, and triterpenoid saponin biosynthesis.BMC biology · 2025Article
- Transcriptomics integrated with targeted metabolomics reveals endogenous hormone changes in tuberous root expansion of Pueraria.BMC genomics · 2024Article
- Integrated metabolomic and transcriptomic analyses provide insights into regulation mechanisms during bulbous stem development in the Chinese medicinal herb plant, Stephania kwangsiensis.BMC plant biology · 2024Article
- Transcriptomic analysis of Chinese yam (Frontiers in nutrition · 2023Article
- Upcoming progress of transcriptomics studies on plants: An overview.Frontiers in plant science · 2022Review
- Hormonal and transcriptional analyses provides new insights into the molecular mechanisms underlying root thickening and isoflavonoid biosynthesis in Callerya speciosa (Champ. ex Benth.) Schot.Scientific reports · 2021Article
- Seasonal Variation in Transcriptomic Profiling ofFrontiers in plant science · 2021Article
- Research Progress and Future Development Trends in Medicinal Plant Transcriptomics.Frontiers in plant science · 2021Review
- Stress induced dynamic adjustment of conserved miR164:NAC module.Plant-environment interactions (Hoboken, N.J.) · 2020Article
- Article
- Cell shape can be uncoupled from formononetin induction in a novel cell line from Callerya speciosa.Plant cell reports · 2018Article
- De Novo Assembly, Annotation, and Characterization of Root Transcriptomes of Three Caladium Cultivars with a Focus on Necrotrophic Pathogen Resistance/Defense-Related Genes.International journal of molecular sciences · 2017Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Callerya speciosa (Champ.) ScHot is a woody perennial plant in Fabaceae, the roots of which are used medicinally. The storage roots of C. speciosa are derived from fibrous roots, but not all fibrous roots can develop into storage roots. To detect key genes involved in storage roots formation, we performed Illumina sequencing of the C. speciosa storage roots and fibrous roots. De novo assembly resulted in 161,926 unigenes, which were subsequently annotated by BLAST, GO and KEGG analyses. After expression profiling, 4538 differentially expressed genes were identified. The KEGG pathway enrichment analysis revealed changes in the biosynthesis of cytokinin, phenylpropanoid, starch, sucrose, flavone and other secondary metabolites. Transcription factor-related differentially expressed genes (DEGs) were also identified, including such gene families as GRAS, COL, MIKC, ERF, LBD, and NAC. The DEGs related to light signaling, starch, sugar, photohormones and cell wall-loosening might be involved in the formation of storage roots. This study provides the first transcriptome profiling of C. speciosa roots, data that will facilitate future research of root development and metabolites with medicinal value as well as the breeding of C. speciosa.
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