Evidence map›Paper›PMID 27486688›Full record

ArticleJournal of medical virology2017

Spike gene deletion quasispecies in serum of patient with acute MERS-CoV infection.

Xiaoyan Lu, Lori A Rowe, Michael Frace, James Stevens, Glen R Abedi, Osman Elnile, Taleb Banassir, Malak Al-Masri, John T Watson, Abdullah Assiri and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Genetic diversity of MERS-CoV spike protein gene in Saudi Arabia.Journal of infection and public health · 2020
    Article
  8. Article
  9. Impact of RNA Virus Evolution on Quasispecies Formation and Virulence.International journal of molecular sciences · 2019
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Xiaoyan LuCenters for Disease Control and Prevention, Atlanta, Georgia.
Lori A RoweCenters for Disease Control and Prevention, Atlanta, Georgia.
Michael FraceCenters for Disease Control and Prevention, Atlanta, Georgia.
James StevensCenters for Disease Control and Prevention, Atlanta, Georgia.
Glen R AbediCenters for Disease Control and Prevention, Atlanta, Georgia.
Osman ElnileMinistry of Health, Riyadh, Saudi Arabia.
Taleb BanassirMinistry of Health, Riyadh, Saudi Arabia.
Malak Al-MasriMinistry of Health, Riyadh, Saudi Arabia.
John T WatsonCenters for Disease Control and Prevention, Atlanta, Georgia.
Abdullah AssiriMinistry of Health, Riyadh, Saudi Arabia.
Dean D ErdmanCenters for Disease Control and Prevention, Atlanta, Georgia.
Centers for Disease Control and Prevention · USMinistry of Health · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spike glycoprotein of the Middle East respiratory coronavirus (MERS-CoV) facilitates receptor binding and cell entry. During investigation of a multi-facility outbreak of MERS-CoV in Taif, Saudi Arabia, we identified a mixed population of wild-type and variant sequences with a large 530 nucleotide deletion in the spike gene from the serum of one patient. The out of frame deletion predicted loss of most of the S2 subunit of the spike protein leaving the S1 subunit with an intact receptor binding domain. This finding documents human infection with a novel genetic variant of MERS-CoV present as a quasispecies. J. Med. Virol. 89:542-545, 2017. © 2016 Wiley Periodicals, Inc.

Indexed as

Genetic VariationSequence DeletionCoronavirus InfectionsDisease OutbreaksHumansMiddle East Respiratory Syndrome CoronavirusSaudi ArabiaSerumSpike Glycoprotein, CoronavirusSpike Glycoprotein, CoronaviruscoronavirusgenomeMERS-CoVspike gene

Identifiers

PMID27486688
PMCPMC7166981
OpenAlexW2499503509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.