Evidence map›Paper›PMID 27486485›Full record

ArticleStandards in genomic sciences2016

Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii.

Yunyoung Kwak, Qing X Li, Jae-Ho Shin

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PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Spirosoma migulaei sp. nov., isolated from soil.Journal of microbiology (Seoul, Korea) · 2017
    Article
  4. Spirosoma lituiforme sp. nov., isolated from soil.Journal of microbiology (Seoul, Korea) · 2017
    Article
  5. Spirosoma daeguensis sp. nov., isolated from beach soil.Journal of microbiology (Seoul, Korea) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yunyoung KwakSchool of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 702-701 Republic of Korea.
Qing X LiDepartment of Molecular Biosciences and Bioengineering, University of Hawaii, Honolulu, HI 96822 USA.
Jae-Ho ShinSchool of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 702-701 Republic of Korea.ORCID 0000-0001-6450-9787

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium rufum JS14(T) (=ATCC BAA-1377(T), CIP 109273(T), JCM 16372(T), DSM 45406(T)), a type strain of the species Mycobacterium rufum sp. . belonging to the family Mycobacteriaceae, was isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soil in Hilo (HI, USA) because it harbors the capability of degrading PAH. Here, we describe the first genome sequence of strain JS14(T), with brief phenotypic characteristics. The genome is composed of 6,176,413 bp with 69.25 % G + C content and contains 5810 protein-coding genes with 54 RNA genes. The genome information on M. rufum JS14(T) will provide a better understanding of the complexity of bacterial catabolic pathways for degradation of specific chemicals.

Indexed as

BiodegradationMycobacteriumPolycyclic aromatic hydrocarbon

Identifiers

PMID27486485
PMCPMC4969647

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.