Evidence map›Paper›PMID 27486448›Full record

ArticleFrontiers in microbiology2016

Transfer of a Catabolic Pathway for Chloromethane in Methylobacterium Strains Highlights Different Limitations for Growth with Chloromethane or with Dichloromethane.

Joshua K Michener, Stéphane Vuilleumier, Françoise Bringel, Christopher J Marx

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. EngineeredmSphere · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Joshua K MichenerDepartment of Biological Engineering, Massachusetts Institute of TechnologyCambridge, MA, USA; Department of Organismic and Evolutionary Biology, Harvard UniversityCambridge, MA, USA; Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA.
Stéphane VuilleumierUMR 7156 UNISTRA -CNRS, Université de Strasbourg Strasbourg, France.
Françoise BringelUMR 7156 UNISTRA -CNRS, Université de Strasbourg Strasbourg, France.
Christopher J MarxDepartment of Organismic and Evolutionary Biology, Harvard UniversityCambridge, MA, USA; Department of Biological Sciences, University of IdahoMoscow, ID, USA; Institute for Bioinformatics and Evolutionary Studies, University of IdahoMoscow, ID, USA; Center for Modeling Complex Interactions, University of IdahoMoscow, ID, USA.
Centre National de la Recherche Scientifique · FRHarvard University · USOak Ridge National Laboratory · USUniversité de Strasbourg · FR

Funding

Experimental evolution recapitulating adaptation after horizontal gene transferF32GM106629 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MICHENER, JOSHUA KIERAN · 2013 to 2015
$113k
NIGMS NIH HHS F32 GM106629
6 · The paper itself

Abstract

Chloromethane (CM) is an ozone-depleting gas, produced predominantly from natural sources, that provides an important carbon source for microbes capable of consuming it. CM catabolism has been difficult to study owing to the challenging genetics of its native microbial hosts. Since the pathways for CM catabolism show evidence of horizontal gene transfer, we reproduced this transfer process in the laboratory to generate new CM-catabolizing strains in tractable hosts. We demonstrate that six putative accessory genes improve CM catabolism, though heterologous expression of only one of the six is strictly necessary for growth on CM. In contrast to growth of Methylobacterium strains with the closely related compound dichloromethane (DCM), we find that chloride export does not limit growth on CM and, in general that the ability of a strain to grow on DCM is uncorrelated with its ability to grow on CM. This heterologous expression system allows us to investigate the components required for effective CM catabolism and the factors that limit effective catabolism after horizontal transfer.

Indexed as

bioremediationchloromethanehorizontal gene transfer (HGT)Methylobacterium extorquensmicrobial evolution

Identifiers

PMID27486448
PMCPMC4949252
OpenAlexW2477379927

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.