Evidence map›Paper›PMID 27486438›Full record

ArticleFrontiers in microbiology2016

Metatranscriptional Response of Chemoautotrophic Ifremeria nautilei Endosymbionts to Differing Sulfur Regimes.

Sherry L Seston, Roxanne A Beinart, Neha Sarode, Abigail C Shockey, Piyush Ranjan, Sangita Ganesh, Peter R Girguis, Frank J Stewart

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Metatranscriptomics bymSystems · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Sherry L SestonDepartment of Biology, Alverno College Milwaukee, WI, USA.
Roxanne A BeinartDepartment of Organismic and Evolutionary Biology, Harvard University Cambridge, MA, USA.
Neha SarodeSchool of Biology, Georgia Institute of Technology Atlanta, GA, USA.
Abigail C ShockeyDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison Madison, WI, USA.
Piyush RanjanSchool of Biology, Georgia Institute of Technology Atlanta, GA, USA.
Sangita GaneshSchool of Biology, Georgia Institute of Technology Atlanta, GA, USA.
Peter R GirguisDepartment of Organismic and Evolutionary Biology, Harvard University Cambridge, MA, USA.
Frank J StewartSchool of Biology, Georgia Institute of Technology Atlanta, GA, USA.
Georgia Institute of Technology · USHarvard University · USAlverno College · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endosymbioses between animals and chemoautotrophic bacteria are ubiquitous at hydrothermal vents. These environments are distinguished by high physico-chemical variability, yet we know little about how these symbioses respond to environmental fluctuations. We therefore examined how the γ-proteobacterial symbionts of the vent snail Ifremeria nautilei respond to changes in sulfur geochemistry. Via shipboard high-pressure incubations, we subjected snails to 105 μM hydrogen sulfide (LS), 350 μM hydrogen sulfide (HS), 300 μM thiosulfate (TS) and seawater without any added inorganic electron donor (ND). While transcript levels of sulfur oxidation genes were largely consistent across treatments, HS and TS treatments stimulated genes for denitrification, nitrogen assimilation, and CO2 fixation, coincident with previously reported enhanced rates of inorganic carbon incorporation and sulfur oxidation in these treatments. Transcripts for genes mediating oxidative damage were enriched in the ND and LS treatments, potentially due to a reduction in O2 scavenging when electron donors were scarce. Oxidative TCA cycle gene transcripts were also more abundant in ND and LS treatments, suggesting that I. nautilei symbionts may be mixotrophic when inorganic electron donors are limiting. These data reveal the extent to which I. nautilei symbionts respond to changes in sulfur concentration and species, and, interpreted alongside coupled biochemical metabolic rates, identify gene targets whose expression patterns may be predictive of holobiont physiology in environmental samples.

Indexed as

chemoautotrophdeep sea ventsendosymbiontIfremeria nautileimetatranscriptomicsmethanotrophic bacteriaSulfur oxidizers

Identifiers

PMID27486438
PMCPMC4949241
OpenAlexW2505182620

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.