Evidence map›Paper›PMID 27486247›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

The stringent response regulates adaptation to darkness in the cyanobacterium Synechococcus elongatus.

Rachel D Hood, Sean A Higgins, Avi Flamholz, Robert J Nichols, David F Savage

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 106 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Suppressor analysis inFrontiers in microbiology · 2026
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Bacteria can anticipate the seasons: photoperiodism in cyanobacteria.bioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Rachel D HoodDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720;
Sean A HigginsDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720;
Avi FlamholzDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720;
Robert J NicholsDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720;
David F SavageDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720; Department of Chemistry, University of California, Berkeley, CA 94720; Energy Biosciences Institute, University of California, Berkeley, CA 94720 savage@berkeley.edu.ORCID 0000-0003-0042-2257
University of California, Berkeley · USEnergy Biosciences Institute · US

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
NIGMS NIH HHS T32 GM066698
6 · The paper itself

Abstract

The cyanobacterium Synechococcus elongatus relies upon photosynthesis to drive metabolism and growth. During darkness, Synechococcus stops growing, derives energy from its glycogen stores, and greatly decreases rates of macromolecular synthesis via unknown mechanisms. Here, we show that the stringent response, a stress response pathway whose genes are conserved across bacteria and plant plastids, contributes to this dark adaptation. Levels of the stringent response alarmone guanosine 3'-diphosphate 5'-diphosphate (ppGpp) rise after a shift from light to dark, indicating that darkness triggers the same response in cyanobacteria as starvation in heterotrophic bacteria. High levels of ppGpp are sufficient to stop growth and dramatically alter many aspects of cellular physiology, including levels of photosynthetic pigments and polyphosphate, DNA content, and the rate of translation. Cells unable to synthesize ppGpp display pronounced growth defects after exposure to darkness. The stringent response regulates expression of a number of genes in Synechococcus, including ribosomal hibernation promoting factor (hpf), which causes ribosomes to dimerize in the dark and may contribute to decreased translation. Although the metabolism of Synechococcus differentiates it from other model bacterial systems, the logic of the stringent response remains remarkably conserved, while at the same time having adapted to the unique stresses of the photosynthetic lifestyle.

Indexed as

Adaptation, PhysiologicalAcclimatizationDarknessDNA ReplicationGene Expression Regulation, BacterialGuanosine TetraphosphatePhotosynthesisSynechococcusGuanosine Tetraphosphatecyanobacteriahibernation promoting factor(p)ppGppstringent responseSynechococcus

Identifiers

PMID27486247
PMCPMC4995992
OpenAlexW2489579440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.