Evidence map›Paper›PMID 27486097›Full record

ArticleGut2017

Germline variation in inflammation-related pathways and risk of Barrett's oesophagus and oesophageal adenocarcinoma.

Matthew F Buas, Qianchuan He, Lisa G Johnson, Lynn Onstad, David M Levine, Aaron P Thrift, Puya Gharahkhani, Claire Palles, Jesper Lagergren, Rebecca C Fitzgerald and 30 more

Abstract read
In one paragraph

Article in Gut, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Pathogenesis of Barrett's Esophagus: Evolving and Emerging Mechanisms.Gastrointestinal endoscopy clinics of North America · 2026
    Review
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  10. Article
  11. The roles of RNA NHeliyon · 2022
    Review
  12. eQTL Set-Based Association Analysis Identifies Novel Susceptibility Loci for Barrett Esophagus and Esophageal Adenocarcinoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Article
  13. Mechanisms and pathophysiology of Barrett oesophagus.Nature reviews. Gastroenterology & hepatology · 2022
    Review
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Matthew F BuasDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Qianchuan HeDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Lisa G JohnsonDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Lynn OnstadDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
David M LevineDepartment of Biostatistics, University of Washington, School of Public Health, Seattle, Washington, USA.
Aaron P ThriftDepartment of Medicine, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas, USA.
Puya GharahkhaniQueensland Institute of Medical Research Berghofer Medical Research Institute Brisbane, Queensland, Australia.
Claire PallesWellcome Trust Centre for Human Genetics and NIHR Comprehensive Biomedical Research Centre, University of Oxford, Oxford, UK.
Jesper LagergrenDepartment of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden.
Rebecca C FitzgeraldMedical Research Council (MRC) MRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, Cambridge, UK.
Weimin YeDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.
Carlos CaldasCancer Research UK, Cambridge Institute, Cambridge, UK.
Nigel C BirdDepartment of Oncology, Medical School, University of Sheffield, Sheffield, UK.
Nicholas J ShaheenDivision of Gastroenterology and Hepatology, University of North Carolina School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.
Leslie BernsteinDepartment of Population Sciences, Beckman Research Institute and City of Hope Comprehensive Cancer Center, Duarte, California, USA.
Marilie D GammonDepartment of Epidemiology, University of North Carolina, Chapel Hill, North Carolina, USA.
Anna H WuDepartment of Preventive Medicine, University of Southern California/Norris Comprehensive Cancer Center, Los Angeles, California, USA.
Laura J HardieDivision of Epidemiology, University of Leeds, Leeds, UK.
Paul D PharoahDepartment of Oncology, University of Cambridge, Cambridge, UK.
Geoffrey LiuPharmacogenomic Epidemiology, Ontario Cancer Institute, Toronto, Ontario, Canada.
Prassad IyerDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, USA.
Douglas A CorleyDivision of Research, Kaiser Permanente Northern California, Oakland, California, USA.
Harvey A RischDepartment of Chronic Disease Epidemiology, Yale School of Public Health, New Haven, Connecticut, USA.
Wong-Ho ChowDepartment of Epidemiology, MD Anderson Cancer Center, Houston, Texas, USA.
Hans PrenenDepartment of Digestive Oncology, University Hospital Gasthuisberg, Leuven, Belgium.
Laura ChegwiddenUniversity of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Addenbrooke's Hospital, Cambridge, UK.
Sharon LoveCentre for Statistics in Medicine and Oxford Clinical Trials Research Unit, Oxford, UK.
Stephen AttwoodDepartment of General Surgery, North Tyneside General Hospital, North Shields, UK.
Paul MoayyediDepartment of Medicine, McMaster University, Hamilton, Ontario, Canada.
David MacDonaldDepartment of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, British Columbia, Canada.
Rebecca HarrisonDepartment of Pathology, Leicester Royal Infirmary, Leicester, UK.
Peter WatsonDepartment of Medicine, Institute of Clinical Science, Royal Victoria Hospital, Belfast, UK.
Hugh BarrDepartment of Upper GI Surgery, Gloucestershire Royal Hospital, Gloucester, UK.
John deCaesteckerDepartment of Gastroenterology, Leicester General Hospital, Leicester, UK.
Ian TomlinsonWellcome Trust Centre for Human Genetics and NIHR Comprehensive Biomedical Research Centre, University of Oxford, Oxford, UK.
Janusz JankowskiUClan Medical School, West Lakes Campus, Rm 127 Lindow Centre, Cumbria, UK.
David C WhitemanCancer Control, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Stuart MacGregorQueensland Institute of Medical Research Berghofer Medical Research Institute Brisbane, Queensland, Australia.
Thomas L VaughanDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Margaret M MadeleineDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Barrett's and Esophageal Adenocarcinoma Genetic Susceptibility Study (BEAGESS)R01CA136725 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L, WHITEMAN, DAVID C · 2009 to 2011
$7.8M
ESTABLISHED INVESTIGATOR AWARD IN CANCER PREVENTION AND CONTROLK05CA124911 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 2007 to 2016
$1.6M
EPIDEMIOLOGY OF BARRETTS ESOPHAGUSR01CA072866 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 1997 to 2000
$543k
Post GWA Analysis of Inflammation Pathways in Barrett's and Esophageal CancerR21DK099804 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MADELEINE, MARGARET M · 2014 to 2015
$484k
Cancer Research UK 10119Cancer Research UK 10124Cancer Research UK 16561Cancer Research UK 16895Cancer Research UK 16942Cancer Research UK 9675Cancer Research UK A4584Cancer Research UK A5675Cancer Research UK A9085NCATS NIH HHS UL1 TR001863NCI NIH HHS K05 CA124911NCI NIH HHS R01 CA072866NCI NIH HHS R01 CA136725NIDDK NIH HHS R21 DK099804
6 · The paper itself

Abstract

objectiveOesophageal adenocarcinoma (OA) incidence has risen sharply in Western countries over recent decades. Local and systemic inflammation is considered an important contributor to OA pathogenesis. Established risk factors for OA and its precursor, Barrett's oesophagus (BE), include symptomatic reflux, obesity and smoking. The role of inherited genetic susceptibility remains an area of active investigation. Here, we explore whether germline variation related to inflammatory processes influences susceptibility to BE/OA.

designWe used data from a genomewide association study of 2515 OA cases, 3295 BE cases and 3207 controls. Our analysis included 7863 single-nucleotide polymorphisms (SNPs) in 449 genes assigned to five pathways: cyclooxygenase (COX), cytokine signalling, oxidative stress, human leucocyte antigen and nuclear factor-κB. A principal components-based analytic framework was employed to evaluate pathway-level and gene-level associations with disease risk.

resultsWe identified a significant signal for the COX pathway in relation to BE risk (p=0.0059, false discovery rate q=0.03), and in gene-level analyses found an association with microsomal glutathione-S-transferase 1 (

conclusionsThis study provides the most comprehensive evaluation of inflammation-related germline variation in relation to risk of BE/OA and suggests that variants in

Indexed as

Germ-Line MutationAdenocarcinomaAgedBarrett EsophagusCytokinesEsophageal NeoplasmsFemaleGene-Environment InteractionGenetic Predisposition to DiseaseGenome-Wide Association StudyGlutathione TransferaseHLA AntigensHumansInflammationMaleMiddle AgedCytokinesGlutathione TransferaseHLA Antigensmicrosomal glutathione S-transferase-INF-kappa BProstaglandin-Endoperoxide SynthasesBARRETT'S OESOPHAGUSGENETIC POLYMORPHISMSINFLAMMATIONOESOPHAGEAL CANCER

Identifiers

PMID27486097
PMCPMC5296402

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.