Evidence map›Paper›PMID 27485254›Full record

ArticleJournal of aquatic animal health2016

Rapid Detection of Cyprinid Herpesvirus 3 in Latently Infected Koi by Recombinase Polymerase Amplification.

Meagan A Prescott, Aimee N Reed, Ling Jin, Manoj K Pastey

Abstract readComparative Study
In one paragraph

Article in Journal of aquatic animal health, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Meagan A Prescotta Department of Biomedical Sciences , College of Veterinary Medicine, Oregon State University , 30th Street, Corvallis , Oregon 97331 , USA.
Aimee N Reeda Department of Biomedical Sciences , College of Veterinary Medicine, Oregon State University , 30th Street, Corvallis , Oregon 97331 , USA.
Ling Jina Department of Biomedical Sciences , College of Veterinary Medicine, Oregon State University , 30th Street, Corvallis , Oregon 97331 , USA.
Manoj K Pasteya Department of Biomedical Sciences , College of Veterinary Medicine, Oregon State University , 30th Street, Corvallis , Oregon 97331 , USA.

Funding

Veterinary Training in Aquatic Animal ModelsT32RR023917 · NCRR · OREGON STATE UNIVERSITY · PI TANGUAY, ROBYN L · 2009 to 2011
$461k
Veterinary Training in Aquatic Animal ModelsT32OD011020 · OD · OREGON STATE UNIVERSITY · PI TANGUAY, ROBYN L · 2012 to 2013
$359k
NCRR NIH HHS T32 RR023917NIH HHS T32 OD011020
6 · The paper itself

Abstract

Since the emergence of cyprinid herpesvirus 3 (CyHV-3), outbreaks have been devastating to Common Carp Cyprinus carpio and koi (a variant of Common Carp), leading to high economic losses. Current diagnostics for detecting CyHV-3 are limited in sensitivity and are further complicated by latency. Here we describe the detection of CyHV-3 by recombinase polymerase amplification (RPA). The RPA assay can detect as low as 10 copies of the CyHV-3 genome by an isothermal reaction and yields results in approximately 20 min. Using the RPA assay, the CyHV-3 genome can be detected in the total DNA of white blood cells isolated from koi latently infected with CyHV-3, while less than 10% of the latently infected koi can be detected by a real-time PCR assay in the total DNA of white blood cells. In addition, RPA products can be detected in a lateral flow device that is cheap and fast and can be used outside of the diagnostic lab. The RPA assay and lateral flow device provide for the rapid, sensitive, and specific amplification of CyHV-3 that with future modifications for field use and validation could lead to enhanced surveillance and early diagnosis of CyHV-3 in the laboratory and field. Received September 14, 2015; accepted April 9, 2016.

Indexed as

CarpsAnimalsDNA VirusesDNA Virus InfectionsFish DiseasesNucleic Acid Amplification TechniquesReal-Time Polymerase Chain ReactionRecombinasesRecombinases

Identifiers

PMID27485254
PMCPMC5958048

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.