Evidence map›Paper›PMID 27485113›Full record

ArticleTumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine2016

Identification of novel biomarkers associated with poor patient outcomes in invasive breast carcinoma.

Renata A Canevari, Fabio A Marchi, Maria A C Domingues, Victor Piana de Andrade, José R F Caldeira, Sergio Verjovski-Almeida, Silvia R Rogatto, Eduardo M Reis

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. The role of PPM1D in cancer and advances in studies of its inhibitors.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 2 countries.

Renata A CanevariInstituto de Pesquisa e Desenvolvimento, Universidade do Vale do Paraíba, São José dos Campos, SP, 12244-000, Brazil.
Fabio A MarchiCIPE - AC Camargo Cancer Center, São Paulo, SP, 01508-010, Brazil.
Maria A C DominguesDepartamento de Patologia, Faculdade de Medicina, Universidade do Estado de São Paulo - UNESP, Botucatu, SP, 18618-000, Brazil.
Victor Piana de AndradeDepartamento de Patologia, AC Camargo Cancer Center, São Paulo, SP, 01509-900, Brazil.
José R F CaldeiraDepartamento de Senologia, Hospital Amaral Carvalho, Jaú, SP, 17210-080, Brazil.
Sergio Verjovski-AlmeidaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo - USP, Av. Prof. Lineu Prestes, 748, Cidade Universitaria, São Paulo, SP, 05508-900, Brazil.
Silvia R RogattoCIPE - AC Camargo Cancer Center, São Paulo, SP, 01508-010, Brazil. silvia.regina.rogatto@rsyd.dk.
Eduardo M ReisDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo - USP, Av. Prof. Lineu Prestes, 748, Cidade Universitaria, São Paulo, SP, 05508-900, Brazil. emreis@iq.usp.br.
AC Camargo Hospital · BRHospital Amaral Carvalho · BRUniversidade Cidade de São Paulo · BRUniversidade de São Paulo · BRUniversidade do Vale do Paraíba · BRUniversidade Estadual Paulista (Unesp) · BRVejle Sygehus · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breast carcinoma (BC) corresponds to 23 % of all cancers in women, with 1.38 million new cases and 460,000 deaths worldwide annually. Despite the significant advances in the identification of molecular markers and different modalities of treatment for primary BC, the ability to predict its metastatic behavior is still limited. The purpose of this study was to identify novel molecular markers associated with distinct clinical outcomes in a Brazilian cohort of BC patients. We generated global gene expression profiles using tumor samples from 24 patients with invasive ductal BC who were followed for at least 5 years, including a group of 15 patients with favorable outcomes and another with nine patients who developed metastasis. We identified a set of 58 differentially expressed genes (p ≤ 0.01) between the two groups. The prognostic value of this metastasis signature was corroborated by its ability to stratify independent BC patient datasets according to disease-free survival and overall survival. The upregulation of B3GNT7, PPM1D, TNKS2, PHB, and GTSE1 in patients with poor outcomes was confirmed by quantitative reverse transcription polymerase chain reaction (RT-qPCR) in an independent sample of patients with BC (47 with good outcomes and eight that presented metastasis). The expression of BCL2-associated agonist of cell death (BAD) protein was determined in 1276 BC tissue samples by immunohistochemistry and was consistent with the reduced BAD mRNA expression levels in metastatic cases, as observed in the oligoarray data. These findings point to novel prognostic markers that can distinguish breast carcinomas with metastatic potential from those with favorable outcomes.

Indexed as

AdultAgedAged, 80 and overBiomarkers, TumorBreast NeoplasmsCarcinoma, Ductal, BreastFemaleFollow-Up StudiesHumansImmunoenzyme TechniquesMicrotubule-Associated ProteinsMiddle AgedN-AcetylglucosaminyltransferasesNeoplasm GradingNeoplasm InvasivenessNeoplasm MetastasisB3GNT7 protein, humanBiomarkers, TumorGTSE1 protein, humanMicrotubule-Associated ProteinsN-AcetylglucosaminyltransferasesPHB protein, humanPPM1D protein, humanProhibitinsProtein Phosphatase 2CRepressor ProteinsRNA, MessengerTankyrasesTNKS2 protein, humanBreast cancerGene expressionMetastasisPrognostic gene signatureTumor biomarkers

Identifiers

PMID27485113
OpenAlexW2482087196

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.