Evidence map›Paper›PMID 27483006›Full record

ArticlePloS one2016

De Novo Transcriptome Assembly and Annotation of the Leaves and Callus of Cyclocarya Paliurus (Bata1) Iljinskaja.

Xiaoxiang Xu, Zhongping Yin, Jiguang Chen, Xiaoqiang Wang, Dayong Peng, Xinchen Shangguan

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Anti-oxidative and immunological role of Cyclocarya paliurus polysaccharide on the liver injury of diabetic rats.Journal of traditional Chinese medicine = Chung i tsa chih ying wen pan · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaoxiang XuJiangxi Key Laboratory of Natural Products and Functional Food; Jiangxi Agricultural University, Nanchang 330045, China.
Zhongping YinJiangxi Key Laboratory of Natural Products and Functional Food; Jiangxi Agricultural University, Nanchang 330045, China.
Jiguang ChenJiangxi Key Laboratory of Natural Products and Functional Food; Jiangxi Agricultural University, Nanchang 330045, China.
Xiaoqiang WangState Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin 300000, China.
Dayong PengJiangxi Key Laboratory of Natural Products and Functional Food; Jiangxi Agricultural University, Nanchang 330045, China.
Xinchen ShangguanJiangxi Key Laboratory of Natural Products and Functional Food; Jiangxi Agricultural University, Nanchang 330045, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclocarya Paliurus (Bata1) Iljinskaja contains various bioactive secondary metabolites especially in leaves, such as triterpenes, flavonoids, polysaccharides and alkaloids, and its leaves are widely used as an hyperglycemic tea in China. In the present paper, we sequenced the transcriptome of the leaves and callus of Cyclocarya Paliurus using Illumina Hiseq 4000 platform. After sequencing and de novo assembly, a total of 65,654 unigenes were generated with an N50 length of 1,244bp. Among them, 35,041 (53.37%) unigenes were annotated in NCBI Non-Redundant database, 19,453 (29.63%) unigenes were classified into Gene Ontology (GO) database, and 7,259 (11.06%) unigenes were assigned to Clusters of Orthologous Group (COG) categories. Furthermore, 11,697 (17.81%) unigenes were mapped onto 335 pathways in Kyoto Encyclopedia of Genes and Genomes (KEGG), among which 1,312 unigenes were identified to be involved in biosynthesis of secondary metabolites. In addition, a total of 11,247 putative simple sequence repeats (SSRs) were detected. This transcriptome dataset provides a comprehensive sequence resource for gene expression profiling, genetic diversity, evolution and further molecular genetics research on Cyclocarya Paliurus.

Indexed as

Gene Expression Regulation, PlantGenome, PlantTranscriptomeAlkaloidsChromosome MappingFlavonoidsGene OntologyGenetic VariationHigh-Throughput Nucleotide SequencingJuglandaceaeMicrosatellite RepeatsMolecular Sequence AnnotationPlant LeavesPolysaccharidesSecondary MetabolismTriterpenesAlkaloidsFlavonoidsPolysaccharidesTriterpenes

Identifiers

PMID27483006
PMCPMC4970709

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.