Evidence map›Paper›PMID 27481928›Full record

ArticleJournal of bacteriology2016

Large Sequence Diversity within the Biosynthesis Locus and Common Biochemical Features of Campylobacter coli Lipooligosaccharides.

Alejandra Culebro, Joana Revez, Ben Pascoe, Yasmin Friedmann, Matthew D Hitchings, Jacek Stupak, Samuel K Sheppard, Jianjun Li, Mirko Rossi

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Alejandra CulebroDepartment of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland aleja.culebro@helsinki.fi.ORCID 0000-0002-9716-8154
Joana RevezDepartment of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland.
Ben PascoeCollege of Medicine, Institute of Life Science, Swansea University, Swansea, United Kingdom Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.
Yasmin FriedmannCollege of Medicine, Institute of Life Science, Swansea University, Swansea, United Kingdom.
Matthew D HitchingsCollege of Medicine, Institute of Life Science, Swansea University, Swansea, United Kingdom.
Jacek StupakInstitute for Biological Sciences, National Research Council, Ottawa, Ontario, Canada.
Samuel K SheppardCollege of Medicine, Institute of Life Science, Swansea University, Swansea, United Kingdom Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.
Jianjun LiInstitute for Biological Sciences, National Research Council, Ottawa, Ontario, Canada.
Mirko RossiDepartment of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland.
Swansea University · GBUniversity of Helsinki · FIInstitute for Biological Sciences · CA

Funding

Medical Research Council MR/L015080/1Medical Research Council MR/M501608/1
6 · The paper itself

Abstract

unlabelledDespite the importance of lipooligosaccharides (LOSs) in the pathogenicity of campylobacteriosis, little is known about the genetic and phenotypic diversity of LOS in Campylobacter coli In this study, we investigated the distribution of LOS locus classes among a large collection of unrelated C. coli isolates sampled from several different host species. Furthermore, we paired C. coli genomic information and LOS chemical composition for the first time to investigate possible associations between LOS locus class sequence diversity and biochemical heterogeneity. After identifying three new LOS locus classes, only 85% of the 144 isolates tested were assigned to a class, suggesting higher genetic diversity than previously thought. This genetic diversity is at the basis of a completely unexplored LOS structural heterogeneity. Mass spectrometry analysis of the LOSs of nine isolates, representing four different LOS classes, identified two features distinguishing C. coli LOS from that of Campylobacter jejuni 2-Amino-2-deoxy-d-glucose (GlcN)-GlcN disaccharides were present in the lipid A backbone, in contrast to the β-1'-6-linked 3-diamino-2,3-dideoxy-d-glucopyranose (GlcN3N)-GlcN backbone observed in C. jejuni Moreover, despite the fact that many of the genes putatively involved in 3-acylamino-3,6-dideoxy-d-glucose (Quip3NAcyl) were apparently absent from the genomes of various isolates, this rare sugar was found in the outer core of all C. coli isolates. Therefore, regardless of the high genetic diversity of the LOS biosynthesis locus in C. coli, we identified species-specific phenotypic features of C. coli LOS that might explain differences between C. jejuni and C. coli in terms of population dynamics and host adaptation. IMPORTANCE: Despite the importance of C. coli to human health and its controversial role as a causative agent of Guillain-Barré syndrome, little is known about the genetic and phenotypic diversity of C. coli LOSs. Therefore, we paired C. coli genomic information and LOS chemical composition for the first time to address this paucity of information. We identified two species-specific phenotypic features of C. coli LOS, which might contribute to elucidating the reasons behind the differences between C. jejuni and C. coli in terms of population dynamics and host adaptation.

Indexed as

Genetic VariationAnimalsBacterial ProteinsBird DiseasesBirdsCampylobacter coliCampylobacter InfectionsChickensFinlandHumansLipopolysaccharidesPhylogenyPoultry DiseasesSwineSwine DiseasesBacterial Proteinslipid-linked oligosaccharidesLipopolysaccharides

Identifiers

PMID27481928
PMCPMC5038013
OpenAlexW2484527135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.