ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2016
DNA barcoding and taxonomy: dark taxa and dark texts.
Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
47 citing papers in PubMed.
- Review
- Beyond conventional pollinators: advancing diversity assessments of neglected insect taxa.Annals of the Entomological Society of America · 2026Article
- Fungal ecology in the age of 'omics.The New phytologist · 2026Review
- Article
- Large-Scale Integrative Taxonomy of the Smallest Insects Reveals Astonishing Temperate Diversity (Hymenoptera: Chalcidoidea: Mymaridae).Molecular ecology · 2025Article
- EntoSieve: Automated Size-Sorting of Insect Bulk Samples to Aid Accurate Megabarcoding and Metabarcoding.Molecular ecology resources · 2025Article
- "Dark taxonomy": A new protocol for overcoming the taxonomic impediments for dark taxa and broadening the taxon base for biodiversity assessment.Cladistics : the international journal of the Willi Hennig Society · 2025Article
- Megabarcoding dark taxa - Assessing the utility of mass DNA barcoding for phorid fly species discovery.PloS one · 2025Article
- German Barcode of Life reveals unexpected diversity of Ceraphronoidea (Hymenoptera).Biodiversity data journal · 2025Article
- Article
- Call me by your name: Considerations of DNA sequences as types within wider discussions on fungal nomenclature.Mycology · 2024Review
- BOLD v4: A Centralized Bioinformatics Platform for DNA-Based Biodiversity Data.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Building a DNA barcode reference collection of Hymenoptera in New Zealand.Biodiversity data journal · 2024Article
- A DNA barcode reference library for the Tipulidae (Insecta, Diptera) of Germany.Biodiversity data journal · 2024Article
- The diversity of ignorance and the ignorance of diversity: origins and implications of "shadow diversity" for conservation biology and extinction.Cambridge prisms. Extinction · 2024Review
- Article
- How, not if, is the question mycologists should be asking about DNA-based typification.MycoKeys · 2023Article
- Article
- Ecological and Oceanographic Perspectives in Future Marine Fungal Taxonomy.Journal of fungi (Basel, Switzerland) · 2022Review
- Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa.Systematic biology · 2022Article
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Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Both classical taxonomy and DNA barcoding are engaged in the task of digitizing the living world. Much of the taxonomic literature remains undigitized. The rise of open access publishing this century and the freeing of older literature from the shackles of copyright have greatly increased the online availability of taxonomic descriptions, but much of the literature of the mid- to late-twentieth century remains offline ('dark texts'). DNA barcoding is generating a wealth of computable data that in many ways are much easier to work with than classical taxonomic descriptions, but many of the sequences are not identified to species level. These 'dark taxa' hamper the classical method of integrating biodiversity data, using shared taxonomic names. Voucher specimens are a potential common currency of both the taxonomic literature and sequence databases, and could be used to help link names, literature and sequences. An obstacle to this approach is the lack of stable, resolvable specimen identifiers. The paper concludes with an appeal for a global 'digital dashboard' to assess the extent to which biodiversity data are available online.This article is part of the themed issue 'From DNA barcodes to biomes'.
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