Evidence map›Paper›PMID 27481777›Full record

ArticleFEMS yeast research2016

Identification of nuclear genes affecting 2-Deoxyglucose resistance in Schizosaccharomyces pombe.

Akshay Vishwanatha, Charalampos Rallis, Shubha Bevkal Subramanyaswamy, Cletus Joseph Michael D'Souza, Jürg Bähler, Martin Ernst Schweingruber

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Article in FEMS yeast research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Akshay VishwanathaDepartment of Studies in Biochemistry, University of Mysore, Manasagangotri, Mysuru 570 006, Karnataka, India agnibhat@gmail.com.
Charalampos RallisResearch Department of Genetics, Evolution and Environment, UCL Institute of Healthy Ageing, University College London, London WC1E 6BT, UK.
Shubha Bevkal SubramanyaswamyDepartment of Studies in Biochemistry, University of Mysore, Manasagangotri, Mysuru 570 006, Karnataka, India Institute of Cell Biology, University of Bern, Baltzerstrasse 4, CH-3012 Bern, Switzerland.
Cletus Joseph Michael D'SouzaDepartment of Studies in Biochemistry, University of Mysore, Manasagangotri, Mysuru 570 006, Karnataka, India.
Jürg BählerResearch Department of Genetics, Evolution and Environment, UCL Institute of Healthy Ageing, University College London, London WC1E 6BT, UK.
Martin Ernst SchweingruberDepartment of Studies in Biochemistry, University of Mysore, Manasagangotri, Mysuru 570 006, Karnataka, India.
University of Mysore · INUniversity College London · GBUniversity of Bern · CH

Funding

Wellcome Trust 095598/Z/11/Z
6 · The paper itself

Abstract

2-Deoxyglucose (2-DG) is a toxic glucose analog. To identify genes involved in 2-DG toxicity in Schizosaccharomyces pombe, we screened a wild-type overexpression library for genes which render cells 2-DG resistant. A gene we termed odr1, encoding an uncharacterized hydrolase, led to strong resistance and altered invertase expression when overexpressed. We speculate that Odr1 neutralizes the toxic form of 2-DG, similar to the Saccharomyces cerevisiae Dog1 and Dog2 phosphatases which dephosphorylate 2-DG-6-phosphate synthesized by hexokinase. In a complementary approach, we screened a haploid deletion library to identify 2-DG-resistant mutants. This screen identified the genes snf5, ypa1, pas1 and pho7 In liquid medium, deletions of these genes conferred 2-DG resistance preferentially under glucose-repressed conditions. The deletion mutants expressed invertase activity more constitutively than the control strain, indicating defects in the control of glucose repression. No S. cerevisiae orthologs of the pho7 gene is known, and no 2-DG resistance has been reported for any of the deletion mutants of the other genes identified here. Moreover, 2-DG leads to derepressed invertase activity in S. pombe, while in S. cerevisiae it becomes repressed. Taken together, these findings suggest that mechanisms involved in 2-DG resistance differ between budding and fission yeasts.

Indexed as

Drug Resistance, FungalGenes, FungalAntimetabolitesDeoxyglucoseGene DeletionGene ExpressionGenetic TestingSchizosaccharomycesAntimetabolitesDeoxyglucose2-Deoxyglucose resistancedeletion libraryfission yeastglucose metabolisminvertase activityodr1 overexpression

Identifiers

PMID27481777
PMCPMC5452730
OpenAlexW2494005992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.