Evidence map›Paper›PMID 27480863›Full record

ArticleAntimicrobial agents and chemotherapy2016

Clinical Variants of the Native Class D β-Lactamase of Acinetobacter baumannii Pose an Emerging Threat through Increased Hydrolytic Activity against Carbapenems.

Emma C Schroder, Zachary L Klamer, Aysegul Saral, Kyle A Sugg, Cynthia M June, Troy Wymore, Agnieszka Szarecka, David A Leonard

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Specific Amino Acid Substitutions in OXA-51-TypeInternational journal of molecular sciences · 2022
    Article
  5. Inhibition of theACS infectious diseases · 2021
    Article
  6. Whole-Genome Assessment of ClinicalFrontiers in microbiology · 2021
    Article
  7. Article
  8. Article
  9. Carbapenemases: TransformingBiomolecules · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Emma C SchroderDepartment of Chemistry, Grand Valley State University, Allendale, Michigan, USA.
Zachary L KlamerDepartment of Cell and Molecular Biology, Grand Valley State University, Allendale, Michigan, USA.
Aysegul SaralDepartment of Biology, Faculty of Arts and Sciences, Artvin Coruh University, Artvin, Turkey.
Kyle A SuggDepartment of Cell and Molecular Biology, Grand Valley State University, Allendale, Michigan, USA.
Cynthia M JuneDepartment of Chemistry, Grand Valley State University, Allendale, Michigan, USA.
Troy WymoreDepartment of Chemistry and Biophysics, University of Michigan, Ann Arbor, Michigan, USA.
Agnieszka SzareckaDepartment of Cell and Molecular Biology, Grand Valley State University, Allendale, Michigan, USA.
David A LeonardDepartment of Chemistry, Grand Valley State University, Allendale, Michigan, USA leonardd@gvsu.edu.
Grand Valley State University · USArtvin Coruh University · TRUniversity of Michigan–Ann Arbor · US

Funding

Investigations of the role of key active site residues of two class D lactamasesR15AI082416 · NIAID · GRAND VALLEY STATE UNIVERSITY · PI LEONARD, DAVID A · 2009 to 2015
$991k
NIAID NIH HHS R15 AI082416
6 · The paper itself

Abstract

The threat posed by the chromosomally encoded class D β-lactamase of Acinetobacter baumannii (OXA-51/66) has been unclear, in part because of its relatively low affinity and turnover rate for carbapenems. Several hundred clinical variants of OXA-51/66 have been reported, many with substitutions of active-site residues. We determined the kinetic properties of OXA-66 and five clinical variants with respect to a wide variety of β-lactam substrates. The five variants displayed enhanced activity against carbapenems and in some cases against penicillins, late-generation cephalosporins, and the monobactam aztreonam. Molecular dynamics simulations show that in OXA-66, P130 inhibits the side-chain rotation of I129 and thereby prevents doripenem binding because of steric clash. A single amino acid substitution at this position (P130Q) in the variant OXA-109 greatly enhances the mobility of both I129 and a key active-site tryptophan (W222), thereby facilitating carbapenem binding. This expansion of substrate specificity represents a very worrisome development for the efficacy of β-lactams against this troublesome pathogen.

Indexed as

Acinetobacter baumanniiAmino Acid Substitutionbeta-Lactamasesbeta-Lactam ResistanceCarbapenemsCatalytic DomainHumansHydrolysisMolecular Dynamics SimulationProtein ConformationSubstrate Specificitybeta-lactamase OXA-51, Acinetobacter baumanniibeta-LactamasesCarbapenems

Identifiers

PMID27480863
PMCPMC5038279
OpenAlexW2483856419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.