Evidence map›Paper›PMID 27480853›Full record

ArticleAntimicrobial agents and chemotherapy2016

Glutamate Racemase Is the Primary Target of β-Chloro-d-Alanine in Mycobacterium tuberculosis.

Gareth A Prosser, Anne Rodenburg, Hania Khoury, Cesira de Chiara, Steve Howell, Ambrosius P Snijders, Luiz Pedro S de Carvalho

Open access · hybridAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  3. Development of a Chemogenetic Approach to Manipulate Intracellular pH.Journal of the American Chemical Society · 2023
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  4. Review
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  6. Review
  7. Review
  8. Tuberculosis Drug Discovery: A Decade of Hit Assessment for Defined Targets.Frontiers in cellular and infection microbiology · 2021
    Review
  9. Frontiers in microbiology · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Construction and Use of TransposonFrontiers in microbiology · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Gareth A ProsserMycobacterial Metabolism and Antibiotic Research Laboratory, The Francis Crick Institute, London, United Kingdom Luiz.Carvalho@crick.ac.uk gareth.prosser@nih.gov.
Anne RodenburgMycobacterial Metabolism and Antibiotic Research Laboratory, The Francis Crick Institute, London, United Kingdom.
Hania KhouryMycobacterial Metabolism and Antibiotic Research Laboratory, The Francis Crick Institute, London, United Kingdom.
Cesira de ChiaraMycobacterial Metabolism and Antibiotic Research Laboratory, The Francis Crick Institute, London, United Kingdom.
Steve HowellProteomics Scientific Technology Platform, Mill Hill Laboratory, The Francis Crick Institute, London, United Kingdom.
Ambrosius P SnijdersProteomics Scientific Technology Platform, Mill Hill Laboratory, The Francis Crick Institute, London, United Kingdom.
Luiz Pedro S de CarvalhoMycobacterial Metabolism and Antibiotic Research Laboratory, The Francis Crick Institute, London, United Kingdom Luiz.Carvalho@crick.ac.uk gareth.prosser@nih.gov.ORCID 0000-0003-2875-4552
The Francis Crick Institute · GB

Funding

Cancer Research UKMedical Research CouncilWellcome Trust 104785/Z/14/Z
6 · The paper itself

Abstract

The increasing global prevalence of drug resistance among many leading human pathogens necessitates both the development of antibiotics with novel mechanisms of action and a better understanding of the physiological activities of preexisting clinically effective drugs. Inhibition of peptidoglycan (PG) biosynthesis and cross-linking has traditionally enjoyed immense success as an antibiotic target in multiple bacterial pathogens, except in Mycobacterium tuberculosis, where it has so far been underexploited. d-Cycloserine, a clinically approved antituberculosis therapeutic, inhibits enzymes within the d-alanine subbranch of the PG-biosynthetic pathway and has been a focus in our laboratory for understanding peptidoglycan biosynthesis inhibition and for drug development in studies of M. tuberculosis During our studies on alternative inhibitors of the d-alanine pathway, we discovered that the canonical alanine racemase (Alr) inhibitor β-chloro-d-alanine (BCDA) is a very poor inhibitor of recombinant M. tuberculosis Alr, despite having potent antituberculosis activity. Through a combination of enzymology, microbiology, metabolomics, and proteomics, we show here that BCDA does not inhibit the d-alanine pathway in intact cells, consistent with its poor in vitro activity, and that it is instead a mechanism-based inactivator of glutamate racemase (MurI), an upstream enzyme in the same early stage of PG biosynthesis. This is the first report to our knowledge of inhibition of MurI in M. tuberculosis and thus provides a valuable tool for studying this essential and enigmatic enzyme and a starting point for future MurI-targeted antibacterial development.

Indexed as

Amino Acid IsomerasesAmino Acid SequenceAntitubercular AgentsBacterial Proteinsbeta-AlanineCatalytic DomainCloning, MolecularEnzyme InhibitorsEscherichia coliGene ExpressionKineticsMicrobial Sensitivity TestsMycobacterium tuberculosisPeptidoglycanProtein BindingRecombinant Proteins3-chloroalanineAmino Acid IsomerasesAntitubercular AgentsBacterial Proteinsbeta-AlanineEnzyme Inhibitorsglutamate racemasePeptidoglycanRecombinant Proteins

Identifiers

PMID27480853
PMCPMC5038272
OpenAlexW2475640653

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.