Evidence map›Paper›PMID 27480851›Full record

ArticleAntimicrobial agents and chemotherapy2016

Mutational Consequences of Ciprofloxacin in Escherichia coli.

Lisa Yun Song, Marisa Goff, Christina Davidian, Zhiyuan Mao, Marisa London, Karen Lam, Madeline Yung, Jeffrey H Miller

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Insights into antibiotic resistance promoted by quinolone exposure.Antimicrobial agents and chemotherapy · 2025
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  11. Article
  12. Case Report: Whole-Genome Sequencing of Serially CollectedFrontiers in cellular and infection microbiology · 2022
    Article
  13. Article
  14. Article
  15. Role of the SOS Response in the Generation of Antibiotic ResistanceAntimicrobial agents and chemotherapy · 2021
    Article
  16. Article
  17. Article
  18. Inhibition of SOS Response by Nitric Oxide Donors inFrontiers in cellular and infection microbiology · 2021
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Lisa Yun SongDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Marisa GoffDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Christina DavidianDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Zhiyuan MaoDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Marisa LondonDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Karen LamDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Madeline YungDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA.
Jeffrey H MillerDepartment of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, and David Geffen School of Medicine, University of California, Los Angeles, California, USA jhmiller@microbio.ucla.edu.
University of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We examined the mutagenic specificity of the widely used antibiotic ciprofloxacin (CPR), which displays weak to moderate mutagenic activity in several bacteria and generates short in-frame deletions in rpoB in Staphylococcus aureus To determine the spectrum of mutations in a system where any gene knockout would result in a recovered mutant, including frameshifts and both short and long deletions, we examined CPR-induced mutations in the thymidylate synthase-encoding thyA gene. Here, any mutation resulting in loss of thymidylate synthase activity generates trimethoprim (Trm) resistance. We found that deletions and insertions in all three reading frames predominated in the spectrum. They tend to be short deletions and cluster in two regions, one being a GC-rich region with potential extensive secondary structures. We also exploited the well-characterized rpoB-Rif(r) system in Escherichia coli to determine that cells grown in the presence of sublethal doses of CPR not only induced short in-frame deletions in rpoB, but also generated base substitution mutations resulting from induction of the SOS system. Some of the specific point mutations prominent in the spectrum of a strain that overproduces the dinB-encoded Pol IV were also present after growth in CPR. However, these mutations disappeared in CPR-treated dinB mutants, whereas the deletions remained. Moreover, CPR-induced deletions also occurred in a strain lacking all three SOS-induced polymerases. We discuss the implications of these findings for the consequences of overuse of CPR and other antibiotics.

Indexed as

MutationAnti-Bacterial AgentsCiprofloxacinDNA-Directed RNA PolymerasesEscherichia coliEscherichia coli ProteinsMutation RateSequence DeletionSOS Response, GeneticsAnti-Bacterial AgentsCiprofloxacinDNA-Directed RNA PolymerasesEscherichia coli ProteinsrpoB protein, E coli

Identifiers

PMID27480851
PMCPMC5038312
OpenAlexW2500977754

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.