ArticleScientific data2016
Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser.
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Article in Scientific data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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9citing papers in PubMed
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9 citing papers in PubMed.
- Structural studies of protein-nucleic acid complexes: A brief overview of the selected techniques.Computational and structural biotechnology journal · 2023Review
- X-Ray absorption spectroscopy on airborne aerosols.Environmental science: atmospheres · 2022Article
- A science education model for large collaborative centers.Structural dynamics (Melville, N.Y.) · 2021Article
- The XBI BioLab for life science experiments at the European XFEL.Journal of applied crystallography · 2021Article
- Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source.Scientific data · 2020Article
- Kinetics of Mimivirus Infection Stages Quantified Using Image Flow Cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2019Article
- Biological single-particle imaging using XFELs - towards the next resolution revolution.IUCrJ · 2018Article
- Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene.Nature communications · 2018Article
- The trickle before the torrent-diffraction data from X-ray lasers.Scientific data · 2016Article
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Authors and funding
60 authors.
Tomas EkebergDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Martin SvendaDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
M Marvin SeibertDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Chantal AbergelInformation Génomique et Structurale (UMR7256) CNRS &Aix-Marseille Université, Institut de Microbiologie de la Méditerranée (FR3479), Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France.ORCID http://orcid.org/0000-0003-1875-4049
Filipe R N C MaiaDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Virginie SeltzerInformation Génomique et Structurale (UMR7256) CNRS &Aix-Marseille Université, Institut de Microbiologie de la Méditerranée (FR3479), Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France.
Daniel P DePonteCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Andrew AquilaLCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Jakob AndreassonDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Bianca IwanDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Olof JönssonDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Daniel WestphalDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Duško OdićDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Inger AnderssonDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Anton BartyCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Meng LiangCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Andrew V MartinCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Lars GumprechtCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Holger FleckensteinCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Saša BajtPhoton Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Miriam BarthelmessPhoton Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Nicola CoppolaCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Jean-Michel ClaverieInformation Génomique et Structurale (UMR7256) CNRS &Aix-Marseille Université, Institut de Microbiologie de la Méditerranée (FR3479), Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France.
N Duane LohStanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Christoph BostedtLCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
John D BozekSynchrotron SOLEIL, L'orme des Merisiers roundabout of St Aubin, 91190 Saint Aubin, France.
Jacek KrzywinskiLCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Marc MesserschmidtLCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Michael J BoganStanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Christina Y HamptonStanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Raymond G SierraStanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Matthias FrankLawrence Livermore National Laboratory, 7000 East Avenue, Mail Stop L-211, Livermore, California 94551, USA.ORCID http://orcid.org/0000-0002-5244-0791
Robert L ShoemanMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Lukas LombMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Lutz FoucarMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Sascha W EppMax Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Daniel RollesMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Artem RudenkoMax Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Robert HartmannPNSensor GmbH, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Andreas HartmannPNSensor GmbH, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Nils KimmelMax-Planck-Institut Halbleiterlabor, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Peter HollPNSensor GmbH, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Georg WeidenspointnerMax-Planck-Institut Halbleiterlabor, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Benedikt RudekMax Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Benjamin ErkMax Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Stephan KassemeyerMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Ilme SchlichtingMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Lothar StrüderPNSensor GmbH, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Joachim UllrichMax Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Carlo SchmidtMax Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Faton KrasniqiMax-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
Günter HauserMax-Planck-Institut Halbleiterlabor, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Christian ReichPNSensor GmbH, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Heike SoltauPNSensor GmbH, Otto-Hahn-Ring 6, 81739 Munich, Germany.
Sebastian SchorbInstitut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany.
Helmut HirsemannPhoton Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Cornelia WundererPhoton Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Heinz GraafsmaPhoton Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Henry ChapmanCenter for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.ORCID http://orcid.org/0000-0002-4655-1743
Janos HajduDepartment of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Free-electron lasers (FEL) hold the potential to revolutionize structural biology by producing X-ray pules short enough to outrun radiation damage, thus allowing imaging of biological samples without the limitation from radiation damage. Thus, a major part of the scientific case for the first FELs was three-dimensional (3D) reconstruction of non-crystalline biological objects. In a recent publication we demonstrated the first 3D reconstruction of a biological object from an X-ray FEL using this technique. The sample was the giant Mimivirus, which is one of the largest known viruses with a diameter of 450 nm. Here we present the dataset used for this successful reconstruction. Data-analysis methods for single-particle imaging at FELs are undergoing heavy development but data collection relies on very limited time available through a highly competitive proposal process. This dataset provides experimental data to the entire community and could boost algorithm development and provide a benchmark dataset for new algorithms.
Indexed as
MimiviridaeX-Ray DiffractionAlgorithmsComputer SimulationCrystallography, X-RayData CollectionElectronsImage Processing, Computer-AssistedImaging, Three-DimensionalLasersModels, TheoreticalParticle SizeScattering, RadiationX-Rays
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