Evidence map›Paper›PMID 27479698›Full record

ArticlePloS one2016

Sensitive and Quantitative Three-Color Protein Imaging in Fission Yeast Using Spectrally Diverse, Recoded Fluorescent Proteins with Experimentally-Characterized In Vivo Maturation Kinetics.

Bassem Al-Sady, Rachel A Greenstein, Hana J El-Samad, Sigurd Braun, Hiten D Madhani

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Bassem Al-SadyDepartment of Microbiology and Immunology, the GW Hooper Foundation, University of California San Francisco, San Francisco, California 94143, United States of America.
Rachel A GreensteinDepartment of Microbiology and Immunology, the GW Hooper Foundation, University of California San Francisco, San Francisco, California 94143, United States of America.
Hana J El-SamadDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California 94143, United States of America.
Sigurd BraunDepartment of Physiological Chemistry, Biomedical Center, Ludwigs-Maximilians-University of Munich, 82152 Martinsried, Germany.
Hiten D MadhaniDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California 94143, United States of America.
San Francisco Foundation · USUniversity of California, San Francisco · USLudwig-Maximilians-Universität München · DE

Funding

Mechanisms of Gene SilencingR01GM071801 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Hiten D Madhani · 2005 to 2026
$7.1M
NIGMS NIH HHS R01 GM071801
6 · The paper itself

Abstract

Schizosaccharomyces pombe is an outstanding model organism for cell biological investigations, yet the range of useful and well-characterized fluorescent proteins (XFPs) is limited. We generated and characterized three recoded fluorescent proteins for 3-color analysis in S.pombe, Super-folder GFP, monomeric Kusabira Orange 2 and E2Crimson. Upon optimization and expression in S. pombe, the three proteins enabled sensitive simultaneous 3-color detection capability. Furthermore, we describe a strategy that combines a pulse-chase approach and mathematical modeling to quantify the maturation kinetics of these proteins in vivo. We observed maturation kinetics in S. pombe that are expected from those described for these proteins in vitro and/or in other cell types, but also unpredicted behaviors. Our studies provide a kinetically-characterized, integrated three-color XFP toolbox for S. pombe.

Indexed as

Flow CytometryGenetic VectorsGenotypeImage Processing, Computer-AssistedKineticsLuminescent ProteinsMicroscopy, FluorescenceProtein FoldingReal-Time Polymerase Chain ReactionRecombinant Fusion ProteinsRNA, MessengerSchizosaccharomycesSchizosaccharomyces pombe ProteinsLuminescent ProteinsRecombinant Fusion ProteinsRNA, MessengerSchizosaccharomyces pombe Proteins

Identifiers

PMID27479698
PMCPMC4968791
OpenAlexW2496783671

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.