ArticleScientific data2016
Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source.
Abstract readDataset
In one paragraph
Article in Scientific data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- Biological applications at the AQUA beamline of the EuPRAXIA@SPARC_LAB free electron laser.European biophysics journal : EBJ · 2026Article
- Coaxial helium electrospray for single-particle imaging at X-ray free electron lasers.Journal of synchrotron radiation · 2025Article
- Conditional guided generative diffusion for particle accelerator beam diagnostics.Scientific reports · 2024Article
- Enhancing electrospray ionization efficiency for particle transmission through an aerodynamic lens stack.Journal of synchrotron radiation · 2024Article
- Helium-electrospray improves sample delivery in X-ray single-particle imaging experiments.Scientific reports · 2024Article
- Water layer and radiation damage effects on the orientation recovery of proteins in single-particle imaging at an X-ray free-electron laser.Scientific reports · 2023Article
- High-fluence and high-gain multilayer focusing optics to enhance spatial resolution in femtosecond X-ray laser imaging.Nature communications · 2022Article
- Single-Image Super-Resolution Improvement of X-ray Single-Particle Diffraction Images Using a Convolutional Neural Network.Journal of chemical information and modeling · 2022Review
- Tree-Code Based Improvement of Computational Performance of the X-ray-Matter-Interaction Simulation Tool XMDYN.Molecules (Basel, Switzerland) · 2022Article
- Effects of radiation damage and inelastic scattering on single-particle imaging of hydrated proteins with an X-ray Free-Electron Laser.Scientific reports · 2021Article
- Selecting XFEL single-particle snapshots by geometric machine learning.Structural dynamics (Melville, N.Y.) · 2021Article
- Single-particle imaging by x-ray free-electron lasers-How many snapshots are needed?Structural dynamics (Melville, N.Y.) · 2020Article
- Cryo-EM, XFELs and the structure conundrum in structural biology.Nature methods · 2019Article
- Coherent diffractive imaging of microtubules using an X-ray laser.Nature communications · 2019Article
- Characterization of X-ray diffraction intensity function from a biological molecule for single particle imaging.Biophysics and physicobiology · 2019Article
- Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene.Nature communications · 2018Article
- Watching Proteins Function with Time-resolved X-ray Crystallography.Journal of physics D: Applied physics · 2017Article
- Article
- Reconstructing three-dimensional protein crystal intensities from sparse unoriented two-axis X-ray diffraction patterns.Journal of applied crystallography · 2017Article
- XFELs for structure and dynamics in biology.IUCrJ · 2017Review
Corrections and comments
- Commented on by
Authors and funding
53 authors.
Anna MunkeLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.ORCID 0000-0002-5510-2245
Jakob AndreassonLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Andrew AquilaSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Salah AwelCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg 22607, Germany.
Kartik AyyerCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg 22607, Germany.
Anton BartyCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg 22607, Germany.
Richard J BeanEuropean XFEL GmbH, Holzkoppel 4, Schenefeld 22869, Germany.
Peter BerntsenAustralian Research Council Centre of Excellence in Advanced Molecular Imaging, La Trobe Institute for Molecular Science, La Trobe University, Melbourne 3086, Australia.
Johan BieleckiLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Sébastien BoutetSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Maximilian BucherSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.ORCID 0000-0001-7896-473X
Henry N ChapmanCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg 22607, Germany.
Benedikt J DaurerLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.ORCID 0000-0002-1887-7551
Hasan DeMirciSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.ORCID 0000-0002-9135-5397
Veit ElserLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, New York 14853, USA.
Petra FrommeArizona State University, School of Molecular Sciences (SMS), Tempe, Arizona 85287-1604, USA.
Janos HajduLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Max F HantkeLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Akifumi HigashiuraInstitute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.
Brenda G HogueBiodesign Center for Applied Structural Discovery, Biodesign Institute at Arizona State University, Tempe 85287, USA.
Ahmad HosseinizadehDepartment of Physics, University of Wisconsin Milwaukee, 3135 North Maryland Ave., Milwaukee, Wisconsin 53211, USA.
Yoonhee KimSchool of Materials Science and Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Richard A KirianBiodesign Center for Applied Structural Discovery, Biodesign Institute at Arizona State University, Tempe 85287, USA.
Hemanth K N ReddyLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Ti-Yen LanLaboratory of Atomic and Solid State Physics, Cornell University, Ithaca, New York 14853, USA.
Daniel S D LarssonLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Haiguang LiuBeijing Computational Science Research Center, 8 W Dongbeiwang Rd, Haidian, Beijing 100193, China.ORCID 0000-0001-7324-6632
N Duane LohCentre for Bio-imaging Sciences, National University of Singapore, 14 Science Drive 4, BLK S1A, Singapore 117543, Singapore.
Filipe R N C MaiaLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.ORCID 0000-0002-2141-438X
Adrian P MancusoEuropean XFEL GmbH, Holzkoppel 4, Schenefeld 22869, Germany.
Kerstin MühligLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Atsushi NakagawaInstitute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.ORCID 0000-0002-1700-7861
Daewoong NamDepartment of Physics, Pohang University of Science and Technology, Pohang 37673, Korea.
Garrett NelsonArizona State University, Department of Physics, Tempe, Arizona 85287, USA.
Carl NettelbladLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Kenta OkamotoLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Abbas OurmazdDepartment of Physics, University of Wisconsin Milwaukee, 3135 North Maryland Ave., Milwaukee, Wisconsin 53211, USA.ORCID 0000-0001-9946-3889
Max RoseDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, Hamburg D-22607, Germany.
Gijs van der SchotLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Peter SchwanderDepartment of Physics, University of Wisconsin Milwaukee, 3135 North Maryland Ave., Milwaukee, Wisconsin 53211, USA.
M Marvin SeibertLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Jonas A SellbergLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.ORCID 0000-0003-2793-5052
Raymond G SierraSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Changyong SongDepartment of Physics, Pohang University of Science and Technology, Pohang 37673, Korea.
Martin SvendaLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Nicusor TimneanuLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.ORCID 0000-0001-7328-0400
Ivan A VartanyantsDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, Hamburg D-22607, Germany.
Daniel WestphalLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), Uppsala SE-75124, Sweden.
Max O WiedornCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg 22607, Germany.
Garth J WilliamsBrookhaven National Laboratory, NSLS-II, Upton, New York 11973, USA.
Paulraj Lourdu XavierCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg 22607, Germany.
Chun Hong YoonSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
James ZookArizona State University, School of Molecular Sciences (SMS), Tempe, Arizona 85287-1604, USA.
Funding
Center for the Rational Design of Membrane Protein CrystallographyU54GM094599 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2014
$6.8MFemtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3MTracking conformational states in enzyme catalysts using correlated X-ray scatterR01GM097463 · NIGMS · STANFORD UNIVERSITY · PI DONIACH, SEBASTIAN · 2012 to 2015
$1.7MEuropean Research Council 609920NIGMS NIH HHS GM097463NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01GM095583NIGMS NIH HHS R01 GM097463NIGMS NIH HHS U54 GM094599
Abstract
Single particle diffractive imaging data from Rice Dwarf Virus (RDV) were recorded using the Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS). RDV was chosen as it is a well-characterized model system, useful for proof-of-principle experiments, system optimization and algorithm development. RDV, an icosahedral virus of about 70 nm in diameter, was aerosolized and injected into the approximately 0.1 μm diameter focused hard X-ray beam at the CXI instrument of LCLS. Diffraction patterns from RDV with signal to 5.9 Ångström were recorded. The diffraction data are available through the Coherent X-ray Imaging Data Bank (CXIDB) as a resource for algorithm development, the contents of which are described here.
Indexed as
VirionAlgorithmsOryzaParticle AcceleratorsReoviridaeX-Rays
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.