Evidence map›Paper›PMID 27478939›Full record

ArticleNature immunology2016

C13orf31 (FAMIN) is a central regulator of immunometabolic function.

M Zaeem Cader, Katharina Boroviak, Qifeng Zhang, Ghazaleh Assadi, Sarah L Kempster, Gavin W Sewell, Svetlana Saveljeva, Jonathan W Ashcroft, Simon Clare, Subhankar Mukhopadhyay and 13 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 1 synthesis or guideline pooled it, 164 citations in OpenAlex.

  1. Lipid homeostasis in diabetic kidney disease.International journal of biological sciences · 2024
    Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Review
  6. Response to Letter to the Editor.Human genomics · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The research progress of LACC1.Frontiers in immunology · 2025
    Review
  16. Review
  17. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  18. Review
  19. Review
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 3 countries.

M Zaeem CaderDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
Katharina BoroviakWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Qifeng ZhangSignalling Programme, Babraham Institute, Babraham Research Campus, Cambridge, UK.
Ghazaleh AssadiDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Sarah L KempsterDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
Gavin W SewellDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
Svetlana SaveljevaDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.ORCID 0000-0002-0644-9752
Jonathan W AshcroftDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
Simon ClareWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Subhankar MukhopadhyayWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Karen P BrownCambridge Institute for Medical Research, University of Cambridge, Cambridge Centre for Lung Infection, Cambridge, UK.
Markus TschurtschenthalerDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.ORCID 0000-0002-0060-4790
Tim RaineDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
Brendan DoeWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Edwin R ChilversDivision of Respiratory Medicine, Department of Medicine, Addenbrooke's and Papworth Hospitals, University of Cambridge, Cambridge, UK.
Jules L GriffinDepartment of Biochemistry, University of Cambridge, Cambridge, UK.
Nicole C KaneiderDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
R Andres FlotoCambridge Institute for Medical Research, University of Cambridge, Cambridge Centre for Lung Infection, Cambridge, UK.
Mauro D'AmatoDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Allan BradleyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Michael J O WakelamSignalling Programme, Babraham Institute, Babraham Research Campus, Cambridge, UK.
Gordon DouganWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Arthur KaserDivision of Gastroenterology and Hepatology, Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Cambridge, UK.
University of Cambridge · GBWellcome Sanger Institute · GBBabraham Institute · GBIkerbasque · ESKarolinska Institutet · SE

Funding

CRSPR II Supplement: Consortium for the production and cryopreservation of knockout miceU42OD011174 · OD · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L. · 2012 to 2015
$17.7M
Consortium for Broad Based Disease Phenotyping of Knockout MiceU54HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L., PAYLOR, RICHARD E · 2011 to 2015
$17.0M
Biotechnology and Biological Sciences Research Council BBS/E/B/000C0411Biotechnology and Biological Sciences Research Council BBS/E/B/000C0413Biotechnology and Biological Sciences Research Council BBS/E/B/000C0415Biotechnology and Biological Sciences Research Council BBS/E/B/000C0417European Research Council 260961Medical Research Council MC_UP_A090_1006Medical Research Council MR/P011705/1NHGRI NIH HHS U54 HG006348NIH HHS U42 OD011174Wellcome Trust 079643Wellcome Trust 100675Wellcome Trust 100891Wellcome Trust 103077Wellcome Trust 106260Wellcome Trust 106260/Z/14/Z
6 · The paper itself

Abstract

Single-nucleotide variations in C13orf31 (LACC1) that encode p.C284R and p.I254V in a protein of unknown function (called 'FAMIN' here) are associated with increased risk for systemic juvenile idiopathic arthritis, leprosy and Crohn's disease. Here we set out to identify the biological mechanism affected by these coding variations. FAMIN formed a complex with fatty acid synthase (FASN) on peroxisomes and promoted flux through de novo lipogenesis to concomitantly drive high levels of fatty-acid oxidation (FAO) and glycolysis and, consequently, ATP regeneration. FAMIN-dependent FAO controlled inflammasome activation, mitochondrial and NADPH-oxidase-dependent production of reactive oxygen species (ROS), and the bactericidal activity of macrophages. As p.I254V and p.C284R resulted in diminished function and loss of function, respectively, FAMIN determined resilience to endotoxin shock. Thus, we have identified a central regulator of the metabolic function and bioenergetic state of macrophages that is under evolutionary selection and determines the risk of inflammatory and infectious disease.

Indexed as

Adenosine TriphosphateAnimalsArthritis, JuvenileBacteriolysisCells, CulturedCrohn DiseaseEnergy MetabolismFatty Acid Synthase, Type IGenetic Predisposition to DiseaseHumansInfectionsInflammasomesIntracellular Signaling Peptides and ProteinsLeprosyLipid MetabolismMacrophagesAdenosine TriphosphateFASN protein, humanFatty Acid Synthase, Type IInflammasomesIntracellular Signaling Peptides and ProteinsLACC1 protein, humanNADPH OxidasesProteins

Identifiers

PMID27478939
PMCPMC6581540
OpenAlexW2481838947

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.