Evidence map›Paper›PMID 27478471›Full record

ArticleArchives of medical science : AMS2016

Identification of differentially expressed genes in salivary adenoid cystic carcinoma cells associated with metastasis.

Wei Chen, Bing-Yao Liu, Xiang Zhang, Xiao-Ge Zhao, Gang Cao, Zhen Dong, Sen-Lin Zhang

Open access · goldAbstract read
In one paragraph

Article in Archives of medical science : AMS, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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  7. Integrated analysis of key mRNAs and lncRNAs in osteoarthritis.Experimental and therapeutic medicine · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Wei ChenDepartment of Stomatology, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.
Bing-Yao LiuDepartment of Stomatology, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.
Xiang ZhangDepartment of Stomatology, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.
Xiao-Ge ZhaoKey Laboratory of Environment and Genes Related to Diseases, Xi'an Jiaotong University College of Medicine, Xi'an, Shaanxi, China.
Gang CaoDepartment of Stomatology, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.
Zhen DongDepartment of Stomatology, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.
Sen-Lin ZhangDepartment of Stomatology, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.
Nanjing University · CNNanjing General Hospital of Nanjing Military Command · CNXi'an Jiaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionSalivary adenoid cystic carcinoma (SACC) is a frequent type of salivary gland cancer which is characterized by slow growth but high incidence of distant metastasis. We aimed to identify therapeutic targets which are associated with metastasis of SACC. MATERIAL AND

methodsTotal RNA was isolated from a low metastatic SACC cell line (ACC-2) and a highly metastatic SACC cell line (ACC-M), which was screened from ACC-2 by combination of in vivo selection and cloning in vitro. Then the total RNA was subjected to microarray analysis. Differentially expressed genes (DEGs) were screened from ACC-M compared with ACC-2, followed by Gene Ontology function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. Function annotation for DEGs also was performed. A protein-protein interaction network (PPI) was constructed for DEGs.

resultsA total of 1128 DEGs were identified from ACC-M cells compared with ACC-2 cells. Both up- and down-regulated DEGs were enriched in different functions in biological process (BP), cellular component (CC) and molecular function (MF). Additionally, down-regulated DEGs were mainly enriched in "Apoptosis" and "Cytokine-cytokine receptor interaction" pathways which involved IFN-α1, NTRK1 and TGF-β1. In the PPI network, PIK3CA, PTPN11 and PIK3R1 had a number of nodes greater than 10.

conclusionsTransforming growth factor β1 might play a pivotal role during lung metastasis of SACC and be selected as a candidate target for treatment of metastatic SACC. IFNA1, NTRK1 and PIK3CA were also associated with tumor metastasis.

Indexed as

adenoid cystic carcinomafunction annotationmetastasisprotein-protein interaction

Identifiers

PMID27478471
PMCPMC4947631
OpenAlexW2503491366

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.