Evidence map›Paper›PMID 27474442›Full record

ArticleGenes & development2016

A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin.

Aniek Janssen, Gregory A Breuer, Eva K Brinkman, Annelot I van der Meulen, Sean V Borden, Bas van Steensel, Ranjit S Bindra, Jeannine R LaRocque, Gary H Karpen

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
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  3. Review
  4. High-resolution global recombination mapping inbioRxiv : the preprint server for biology · 2026
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  5. Polymorphic 3D genome architecture mediated by transposable elements.bioRxiv : the preprint server for biology · 2026
    Article
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Aniek JanssenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA;
Gregory A BreuerDepartment of Therapeutic Radiology, Yale School of Medicine, New Haven, Connecticut 06510, USA; Department of Experimental Pathology, Yale School of Medicine, New Haven, Connecticut 06510, USA;
Eva K BrinkmanDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam 1066 CX, the Netherlands;
Annelot I van der MeulenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA;
Sean V BordenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA;
Bas van SteenselDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam 1066 CX, the Netherlands;
Ranjit S BindraDepartment of Therapeutic Radiology, Yale School of Medicine, New Haven, Connecticut 06510, USA; Department of Experimental Pathology, Yale School of Medicine, New Haven, Connecticut 06510, USA;
Jeannine R LaRocqueDepartment of Human Science, School of Nursing and Health Studies, Georgetown University Medical Center, Washington, DC 20057, USA;
Gary H KarpenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA; Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California 94720, USA.
Lawrence Berkeley National Laboratory · USYale University · USGeorgetown University · USOncode Institute · NLThe Netherlands Cancer Institute · NL

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
NRSA Training CoreTL1TR001864 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$9.9M
Regulation of DNA Damage and Repair in HeterochromatinR01GM086613 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2011 to 2014
$1.6M
Double-strand break repair and suppression of recombination in D. melanogasterR15GM110454 · NIGMS · GEORGETOWN UNIVERSITY · PI LAROCQUE KAPPAS, JEANNINE · 2014 to 2014
$354k
NCATS NIH HHS TL1 TR001864NIGMS NIH HHS R01 GM086613NIGMS NIH HHS R15 GM110454NIGMS NIH HHS T32 GM007205
6 · The paper itself

Abstract

Repair of DNA double-strand breaks (DSBs) must be properly orchestrated in diverse chromatin regions to maintain genome stability. The choice between two main DSB repair pathways, nonhomologous end-joining (NHEJ) and homologous recombination (HR), is regulated by the cell cycle as well as chromatin context.Pericentromeric heterochromatin forms a distinct nuclear domain that is enriched for repetitive DNA sequences that pose significant challenges for genome stability. Heterochromatic DSBs display specialized temporal and spatial dynamics that differ from euchromatic DSBs. Although HR is thought to be the main pathway used to repair heterochromatic DSBs, direct tests of this hypothesis are lacking. Here, we developed an in vivo single DSB system for both heterochromatic and euchromatic loci in Drosophila melanogaster Live imaging of single DSBs in larval imaginal discs recapitulates the spatio-temporal dynamics observed for irradiation (IR)-induced breaks in cell culture. Importantly, live imaging and sequence analysis of repair products reveal that DSBs in euchromatin and heterochromatin are repaired with similar kinetics, employ both NHEJ and HR, and can use homologous chromosomes as an HR template. This direct analysis reveals important insights into heterochromatin DSB repair in animal tissues and provides a foundation for further explorations of repair mechanisms in different chromatin domains.

Indexed as

DNA Breaks, Double-StrandedAnimalsCytological TechniquesDNA RepairDrosophila melanogasterEuchromatinHeterochromatinHomologous RecombinationLarvaEuchromatinHeterochromatincell cycleDrosophilaheterochromatinhomologNHEJrecombination repair

Identifiers

PMID27474442
PMCPMC4973294
OpenAlexW2479329624

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.