Evidence map›Paper›PMID 27473724›Full record

ArticleVirology journal2016

A novel rodent Chapparvovirus in feces of wild rats.

Shixing Yang, Zhijian Liu, Yan Wang, Wang Li, Xingli Fu, Yuan Lin, Quan Shen, Xiaochun Wang, Hua Wang, Wen Zhang

Abstract read
In one paragraph

Article in Virology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. European Hedgehogs as Hosts of Chaphamaparvovirus, Italy.Animals : an open access journal from MDPI · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. NovelViruses · 2023
    Article
  11. Article
  12. Molecular identification ofFrontiers in veterinary science · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shixing YangSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Zhijian LiuSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Yan WangSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Wang LiSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Xingli FuSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Yuan LinSchool of Basic Medical Sciences, Ningxia Medical University, Yinchuan, Gansu, 750000, People's Republic of China.
Quan ShenSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Xiaochun WangSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Hua WangSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Wen ZhangSchool of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, People's Republic of China. z0216wen@yahoo.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chapparvovirus, a recently determined new genus in the family Parvoviridae, can infect many species of animals including bats, chickens, and pigs. Here, using viral metagenomics method, we identified a novel Chapparvovirus from feces of wild rats and designated it as rat parvovirus 2 (RPV2). The nearly complete genome of RPV2 is 4222-nt long and includes two ORFs encoding a 654-aa nonstructural protein 1 (NS1) and a 472-aa capsid protein (VP), respectively. Phylogenetic analysis over the amino acid sequence of the NS1 showed that RPV2 clustered with Eidolon helvum parvovirus 2 (EHPV2), porcine parvovirus 7 (PPV7), and turkey parvovirus 1 (TP1), forming a separate clade. Sequence analysis indicated that the NS1 protein of RPV2 shared the highest amino acid sequence identity (51 %) with that of EHPV2. According to the genetic distance-based criteria, RPV2 identified here belongs to a novel species of Chapparvovirus.

Indexed as

AnimalsAnimals, WildChickensChinaFecesGenome, ViralOpen Reading FramesParvoviridaeParvoviridae InfectionsPhylogenyRatsRodent DiseasesSwineViral ProteinsViral ProteinsChapparvovirusGenome structureViral MetagenomicsWild rat

Identifiers

PMID27473724
PMCPMC4966819

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.