Evidence map›Paper›PMID 27473602›Full record

ArticleJournal of molecular biology2016

S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.

Cédric Eichmann, Christos Tzitzilonis, Tomohiro Nakamura, Witek Kwiatkowski, Innokentiy Maslennikov, Senyon Choe, Stuart A Lipton, Roland Riek

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Computational Structural Biology ofFrontiers in oncology · 2018
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Cédric EichmannLaboratory of Physical Chemistry, Swiss Federal Institute of Technology, ETH-Hönggerberg, CH-8093 Zürich, Switzerland.
Christos TzitzilonisStructural Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Tomohiro NakamuraNeurodegenerative Disease Center, Scintillon Institute, San Diego, CA 92121, USA.
Witek KwiatkowskiStructural Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Innokentiy MaslennikovStructural Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Senyon ChoeStructural Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Stuart A LiptonNeurodegenerative Disease Center, Scintillon Institute, San Diego, CA 92121, USA; Department of Neurosciences, University of California, San Diego, School of Medicine, La Jolla, CA 92093, USA; Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Roland RiekLaboratory of Physical Chemistry, Swiss Federal Institute of Technology, ETH-Hönggerberg, CH-8093 Zürich, Switzerland; Structural Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA. Electronic address: roland.riek@phys.chem.ethz.ch.
Salk Institute for Biological Studies · USÉcole Polytechnique Fédérale de Lausanne · CHScintillon Institute · USScripps Research Institute · US

Funding

PROJECT III - GENETIC APPROACH TO EXCITATORY TRANSMISSIONP01HD029587 · NICHD · SCINTILLON INSTITUTE FOR PHOTOBIOLOGY · PI LIPTON, STUART A · 1992 to 2016
$21.9M
Novel Proteomics Approach to HIV-Associated Neurocognitive Disorder & Drug AbuseDP1DA041722 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI LIPTON, STUART A · 2016 to 2020
$7.0M
Modeling Parkinson's Disease with Isogenic hiPSC-Derived Dopaminergic NeuronsR01NS086890 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI LIPTON, STUART A · 2014 to 2018
$2.1M
Protection of Brain Injury from Cyanide Poisoning by Carnosic AcidR21NS080799 · NINDS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI LIPTON, STUART A · 2012 to 2013
$975k
NICHD NIH HHS P01 HD029587NIDA NIH HHS DP1 DA041722NINDS NIH HHS R01 NS086890NINDS NIH HHS R21 NS080799
6 · The paper itself

Abstract

S-Nitrosylation is well established as an important post-translational regulator in protein function and signaling. However, relatively little is known about its structural and dynamical consequences. We have investigated the effects of S-nitrosylation on the rhodanese domain of the Escherichia coli integral membrane protein YgaP by NMR, X-ray crystallography, and mass spectrometry. The results show that the active cysteine in the rhodanese domain of YgaP is subjected to two competing modifications: S-nitrosylation and S-sulfhydration, which are naturally occurring in vivo. It has been observed that in addition to inhibition of the sulfur transfer activity, S-nitrosylation of the active site residue Cys63 causes an increase in slow motion and a displacement of helix 5 due to a weakening of the interaction between the active site and the helix dipole. These findings provide an example of how nitrosative stress can exert action at the atomic level.

Indexed as

Protein Processing, Post-TranslationalCatalytic DomainCrystallography, X-RayCysteineEscherichia coliEscherichia coli ProteinsMagnetic Resonance SpectroscopyMass SpectrometryModels, MolecularProtein ConformationThiosulfate SulfurtransferaseCysteineEscherichia coli ProteinsThiosulfate SulfurtransferaseYgaP protein, E colimass spectrometrynuclear magnetic resonance (NMR)post-translational modificationrhodaneseX-ray crystallography

Identifiers

PMID27473602
PMCPMC5260856
OpenAlexW2484298141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.