Evidence map›Paper›PMID 27472324›Full record

ArticleInternational journal of molecular sciences2016

Glutathione Transferases Superfamily: Cold-Inducible Expression of Distinct GST Genes in Brassica oleracea.

Harshavardhanan Vijayakumar, Senthil Kumar Thamilarasan, Ashokraj Shanmugam, Sathishkumar Natarajan, Hee-Jeong Jung, Jong-In Park, HyeRan Kim, Mi-Young Chung, Ill-Sup Nou

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  6. Overlooked and misunderstood: can glutathione conjugates be clues to understanding plant glutathione transferases?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  7. Article
  8. Article
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  13. International journal of molecular sciences · 2022
    Article
  14. Article
  15. The Role of thePlants (Basel, Switzerland) · 2021
    Article
  16. Overexpression of A Biotic Stress-InducibleInternational journal of molecular sciences · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Harshavardhanan VijayakumarDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. vharshavardhanan@gmail.com.
Senthil Kumar ThamilarasanDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. seninfobio@gmail.com.
Ashokraj ShanmugamDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. araj866@gmail.com.
Sathishkumar NatarajanDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. sathisbioinfo@gmail.com.
Hee-Jeong JungDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. my-656@hanmail.net.
Jong-In ParkDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. jipark@sunchon.ac.kr.
HyeRan KimPlant Systems Engineering Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahangno, Daejeon 34141, Korea. kimhr@kribb.re.kr.
Mi-Young ChungDepartment of Agricultural Education, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. queen@sunchon.ac.kr.
Ill-Sup NouDepartment of Horticulture, Sunchon National University, 255, Jungang-ro, Suncheon 57922, Korea. nis@sunchon.ac.kr.
Sunchon National University · KRKorea Research Institute of Bioscience and Biotechnology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants, as sessile organisms, can suffer serious growth and developmental consequences under cold stress conditions. Glutathione transferases (GSTs, EC 2.5.1.18) are ubiquitous and multifunctional conjugating proteins, which play a major role in stress responses by preventing oxidative damage by reactive oxygen species (ROS). Currently, understanding of their function(s) during different biochemical and signaling pathways under cold stress condition remain unclear. In this study, using combined computational strategy, we identified 65 Brassica oleracea glutathione transferases (BoGST) and characterized them based on evolutionary analysis into 11 classes. Inter-species and intra-species duplication was evident between BoGSTs and Arabidopsis GSTs. Based on localization analyses, we propose possible pathways in which GST genes are involved during cold stress. Further, expression analysis of the predicted putative functions for GST genes were investigated in two cold contrasting genotypes (cold tolerance and susceptible) under cold condition, most of these genes were highly expressed at 6 h and 1 h in the cold tolerant (CT) and cold susceptible (CS) lines, respectively. Overall, BoGSTU19, BoGSTU24, BoGSTF10 are candidate genes highly expressed in B. oleracea. Further investigation of GST superfamily in B. oleracea will aid in understanding complex mechanism underlying cold tolerance in plants.

Indexed as

Gene Expression Regulation, EnzymologicGene Expression Regulation, PlantBrassicaCold-Shock ResponseComputational BiologyGlutathione TransferaseMarkov ChainsReal-Time Polymerase Chain ReactionGlutathione TransferaseBrassica oleraceacoldcontrasting genotypesglutathione transferase (GST)tolerance

Identifiers

PMID27472324
PMCPMC5000609
OpenAlexW2506571510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.