Evidence map›Paper›PMID 27472223›Full record

ArticlePloS one2016

A Spontaneous Missense Mutation in Branched Chain Keto Acid Dehydrogenase Kinase in the Rat Affects Both the Central and Peripheral Nervous Systems.

J Samuel Zigler, Colin A Hodgkinson, Megan Wright, Andrew Klise, Olof Sundin, Karl W Broman, Fielding Hejtmancik, Hao Huang, Bonnie Patek, Yuri Sergeev and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. A metabolic basis for motor deficits in mice lacking BCKDK.The Journal of nutritional biochemistry · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Role of glia in optic nerve.Progress in retinal and eye research · 2021
    Review
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

J Samuel ZiglerDepartment of Ophthalmology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Colin A HodgkinsonNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Rockville, MD, United States of America.
Megan WrightDepartment of Neurology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Andrew KliseDepartment of Ophthalmology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Olof SundinDepartment of Biomedical Sciences, Texas Tech University Health Science Center, El Paso, TX, United States of America.ORCID http://orcid.org/0000-0001-8125-2653
Karl W BromanDepartment of Biostatistics & Informatics, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States of America.
Fielding HejtmancikNational Eye Institute, National Institutes of Health, Bethesda, MD, United States of America.ORCID http://orcid.org/0000-0002-4788-0362
Hao HuangDepartment of Radiology, Children's Hospital of Philadelphia, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America.
Bonnie PatekDepartment of Ophthalmology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Yuri SergeevNational Eye Institute, National Institutes of Health, Bethesda, MD, United States of America.
Stacey HoseDepartment of Ophthalmology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Cory BraytonDepartment of Molecular and Comparative Pathobiology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.ORCID http://orcid.org/0000-0002-6666-6548
Jiao XaiodongNational Eye Institute, National Institutes of Health, Bethesda, MD, United States of America.
David VasquezDepartment of Neurosurgery, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Nicholas MaragakisDepartment of Neurology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Susumu MoriDepartment of Radiology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
David GoldmanNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Rockville, MD, United States of America.
Ahmet HokeDepartment of Neurology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.ORCID http://orcid.org/0000-0003-1215-3373
Debasish SinhaDepartment of Ophthalmology, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Johns Hopkins University · USNational Institutes of Health · USNational Institute on Alcohol Abuse and Alcoholism · USChildren's Hospital of Philadelphia · USTexas Tech University · USUniversity of Wisconsin–Madison · US

Funding

Integrative genetics of behavior with high throughput technologiesZIAAA000301 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI GOLDMAN, DAVID · 2009 to 2025
$68.6M
Proteins From Hereditary Eye Diseases: In-silico and Experimental StudiesZIAEY000476 · NEI · NATIONAL EYE INSTITUTE · PI SERGEEV, YURI · 2009 to 2025
$16.8M
Genetic analysis of a spontaneous mutation in a rat with a novel hind limb defectR21HD059008 · NICHD · JOHNS HOPKINS UNIVERSITY · PI SINHA, DEBASISH · 2009 to 2010
$449k
NICHD NIH HHS R21 HD059008
6 · The paper itself

Abstract

A novel mutation, causing a phenotype we named frogleg because its most obvious characteristic is a severe splaying of the hind limbs, arose spontaneously in a colony of Sprague-Dawley rats. Frogleg is a complex phenotype that includes abnormalities in hind limb function, reduced brain weight with dilated ventricles and infertility. Using micro-satellite markers spanning the entire rat genome, the mutation was mapped to a region of rat chromosome 1 between D1Rat131 and D1Rat287. Analysis of whole genome sequencing data within the linkage interval, identified a missense mutation in the branched-chain alpha-keto dehydrogenase kinase (Bckdk) gene. The protein encoded by Bckdk is an integral part of an enzyme complex located in the mitochondrial matrix of many tissues which regulates the levels of the branched-chain amino acids (BCAAs), leucine, isoleucine and valine. BCAAs are essential amino acids (not synthesized by the body), and circulating levels must be tightly regulated; levels that are too high or too low are both deleterious. BCKDK phosphorylates Ser293 of the E1α subunit of the BCKDH protein, which catalyzes the rate-limiting step in the catabolism of the BCAAs, inhibiting BCKDH and thereby, limiting breakdown of the BCAAs. In contrast, when Ser293 is not phosphorylated, BCKDH activity is unchecked and the levels of the BCAAs will decrease dramatically. The mutation is located within the kinase domain of Bckdk and is predicted to be damaging. Consistent with this, we show that in rats homozygous for the mutation, phosphorylation of BCKDH in the brain is markedly decreased relative to wild type or heterozygous littermates. Further, circulating levels of the BCAAs are reduced by 70-80% in animals homozygous for the mutation. The frogleg phenotype shares important characteristics with a previously described Bckdk knockout mouse and with human subjects with Bckdk mutations. In addition, we report novel data regarding peripheral neuropathy of the hind limbs.

Indexed as

Mutation, Missense3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide)AnimalsCentral Nervous SystemPeripheral Nervous SystemRats3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide)

Identifiers

PMID27472223
PMCPMC4966912
OpenAlexW2497704287

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.