Evidence map›Paper›PMID 27470908›Full record

ArticleRapid communications in mass spectrometry : RCM2016

Influence of carboxylation on osteocalcin detection by mass spectrometry.

Timothy P Cleland, Corinne J Thomas, Caren M Gundberg, Deepak Vashishth

Abstract readEvaluation Study
In one paragraph

Article in Rapid communications in mass spectrometry : RCM, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Timothy P ClelandDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, 12182, USA.
Corinne J ThomasDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, 12182, USA.
Caren M GundbergDepartment of Orthopedics and Rehabilitation, Yale University, New Haven, CT, 06520, USA.
Deepak VashishthDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, 12182, USA. vashid@rpi.edu.
Rensselaer Polytechnic Institute · USYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Effects of Osteocalcin and Osteopontin on Damage Morphology and Bone FragilityR01AR049635 · NIAMS · RENSSELAER POLYTECHNIC INSTITUTE · PI VASHISHTH, DEEPAK · 2002 to 2014
$3.3M
NCATS NIH HHS UL1 TR001863NIAMS NIH HHS R01 AR049635
6 · The paper itself

Abstract

rationaleOsteocalcin is a small, abundant bone protein that is difficult to detect using high-throughput tandem mass spectrometry (MS/MS) proteomic approaches from bone protein extracts, and is predominantly detected by non-MS immunological methods. Here, we analyze bovine osteocalcin and its post-translational modifications to determine why a protein of this size goes undetected.

methodsOsteocalcin was purified from cow bone using well-established methods. Intact osteocalcin or trypsin-digested osteocalcin were separated using an Agilent 1200 series high-performance liquid chromatography (HPLC) system and analyzed using a ThermoScientific LTQ-Orbitrap XL after fragmentation with higher-energy collision dissociation. Data were analyzed using Mascot or Prosight Lite.

resultsOur results support previous findings that the cow osteocalcin has up to three carboxylations using both intact osteocalcin and digested forms. Using Mascot, we were able to detect osteocalcin peptides, but no fragments that localized the carboxylations. Full annotation using Prosight Lite of the intact (three carboxylations), N-terminal peptide (one carboxylation), and middle peptide (two carboxylations) showed complete fragmentation was present, but complete neutral loss was observed.

conclusionsOsteocalcin carboxylation, and its associated neutral losses, makes high-throughput detection of this protein challenging; however, alternative fragmentation or limited purification can overcome these challenges. Copyright © 2016 John Wiley & Sons, Ltd.

Indexed as

AnimalsCattleMass SpectrometryOsteocalcinPeptidesProtein Processing, Post-TranslationalProteomicsOsteocalcinPeptides

Identifiers

PMID27470908
PMCPMC5014568
OpenAlexW2509108313

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.