Evidence map›Paper›PMID 27470660›Full record

ArticleMicrobial biotechnology2016

High throughput genomic sequencing of bioaerosols in broiler chicken production facilities.

Kate M O'Brien, Michael S Chimenti, Morgan Farnell, Tom Tabler, Thomas Bair, Joey L Bray, Matthew W Nonnenmann

Abstract read
In one paragraph

Article in Microbial biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Bacterial extracellular vesicles isolated from organic dust induce neutrophilic inflammation in the lung.American journal of physiology. Lung cellular and molecular physiology · 2020
    Article
  6. Composition and Function of Chicken Gut Microbiota.Animals : an open access journal from MDPI · 2020
    Review
  7. Article
  8. Recovery of Fungal Cells from Air Samples: a Tale of Loss and Gain.Applied and environmental microbiology · 2019
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kate M O'BrienDepartment of Occupational and Environmental Health, University of Iowa, Iowa City, IA, USA.
Michael S ChimentiIowa Institute of Human Genetics, Bioinformatics Division, University of Iowa, Iowa City, IA, USA.
Morgan FarnellMississippi State University Extension Service, Mississippi State, MS, USA.
Tom TablerMississippi State University Extension Service, Mississippi State, MS, USA.
Thomas BairIowa Institute of Human Genetics, Bioinformatics Division, University of Iowa, Iowa City, IA, USA.
Joey L BrayDepartment of Agriculture, Stephen F. Austin State University, Nacogdoches, TX, USA.
Matthew W NonnenmannDepartment of Occupational and Environmental Health, University of Iowa, Iowa City, IA, USA. matthew-nonnenmann@uiowa.edu.

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
NIEHS NIH HHS P30 ES005605NIOSH CDC HHS U50 OH007541NIOSH CDC HHS U54 OH007541
6 · The paper itself

Abstract

Chronic inhalation exposure to agricultural dust promotes the development of chronic respiratory diseases among poultry workers. Poultry dust is composed of dander, chicken feed, litter bedding and microbes. However, the microbial composition and abundance has not been fully elucidated. Genomic DNA was extracted from settled dust and personal inhalable dust collected while performing litter sampling or mortality collection tasks. DNA libraries were sequenced using a paired-end sequencing-by-synthesis approach on an Illumina HiSeq 2500. Sequencing data showed that poultry dust is predominantly composed of bacteria (64-67%) with a small quantity of avian, human and feed DNA (< 2% of total reads). Staphylococcus sp. AL1, Salinicoccus carnicancri and Lactobacillus crispatus were the most abundant bacterial species in personal exposure samples of inhalable dust. Settled dust had a moderate relative abundance of these species as well as Staphylococcus lentus and Lactobacillus salivarius. There was a statistical difference between the microbial composition of aerosolized and settled dust. Unlike settled dust composition, aerosolized dust composition had little variance between samples. These data provide an extensive analysis of the microbial composition and relative abundance in personal inhalable poultry dust and settled poultry dust.

Indexed as

AerosolsAir MicrobiologyAnimal HusbandryBiotaAnimalsArchaeaBacteriaChickensComputational BiologyDustFungiHigh-Throughput Nucleotide SequencingHumansSequence Analysis, DNASoil MicrobiologyVirusesAerosolsDust

Identifiers

PMID27470660
PMCPMC5072194

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.