ArticleFunctional & integrative genomics2016
Comparative transcriptomics of rice plants under cold, iron, and salt stresses.
Article in Functional & integrative genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed, 60 citations in OpenAlex.
- Comparative transcriptomics unveils the role of DELLA protein GAIP-B in cold tolerance of mango (Mangifera indica L.).BMC plant biology · 2026Article
- Mining and Analysis of Salt Tolerance Genes in Maize at the Seedling Stage.Current issues in molecular biology · 2026Article
- Genomic dissection of iron toxicity tolerance in rice identifies key loci, candidate genes, and associated haplotypes.Scientific reports · 2026Article
- Comprehensive review of multiomics applications and remediation of plant heavy metal toxicity.Stress biology · 2025Review
- An RNA helicase coordinates with iron signal regulators to alleviate chilling stress in Arabidopsis.Nature communications · 2025Article
- Review
- Metabolite comparative variation related lipid metabolisms among fruit, leaf, and stem ofHeliyon · 2024Article
- Candidate Genes and Favorable Haplotypes Associated with Iron Toxicity Tolerance in Rice.International journal of molecular sciences · 2024Article
- Transcriptome profiling of two rice varieties reveals their molecular responses under high night-time temperature.PloS one · 2024Article
- Improving Rice Leaf Shape Using CRISPR/Cas9-Mediated Genome Editing ofInternational journal of molecular sciences · 2023Article
- Application of RNA sequencing to understand the response of rice seedlings to salt-alkali stress.BMC genomics · 2023Article
- Variety-Specific Transcriptional and Alternative Splicing Regulations Modulate Salt Tolerance in Rice from Early Stage of Stress.Rice (New York, N.Y.) · 2022Article
- Transcriptome Analysis Reveals Molecular Mechanisms under Salt Stress in Leaves of Foxtail Millet (Plants (Basel, Switzerland) · 2022Article
- Combined morpho-physiological, ionomic and transcriptomic analyses reveal adaptive responses of allohexaploid wheat (Triticum aestivum L.) to iron deficiency.BMC plant biology · 2022Article
- Quantitative Trait Locus Mapping of Salt Tolerance in Wild RiceInternational journal of molecular sciences · 2022Article
- Article
- Screening of Salt Stress Responsive Genes inPlants (Basel, Switzerland) · 2020Article
- Chelators of iron and their role in plant's iron management.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Review
- Article
- Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era.Plants (Basel, Switzerland) · 2020Review
Corrections and comments
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Abiotic stresses such as salinity, iron toxicity, and low temperatures are the main limiting factors of rice (Oryza sativa L.) yield. The elucidation of the genes involved in responses to these stresses is extremely important to understand the mechanisms that confer tolerance, as well as for the development of cultivars adapted to these conditions. In this study, the RNA-seq technique was used to compare the transcriptional profile of rice leaves (cv. BRS Querência) in stage V3, exposed to cold, iron, and salt stresses for 24 h. A range of 41 to 51 million reads was aligned, in which a total range of 88.47 to 89.21 % was mapped in the reference genome. For cold stress, 7905 differentially expressed genes (DEGs) were observed, 2092 for salt and 681 for iron stress; 370 of these were common to the three DEG stresses. Functional annotation by software MapMan demonstrated that cold stress usually promoted the greatest changes in the overall metabolism, and an enrichment analysis of overrepresented gene ontology (GO) terms showed that most of them are contained in plastids, ribosome, and chloroplasts. Saline stress induced a more complex interaction network of upregulated overrepresented GO terms with a relatively low number of genes compared with cold stress. Our study demonstrated a high number of differentially expressed genes under cold stress and a greater relationship between salt and iron stress levels. The physiological process most affected at the molecular level by the three stresses seems to be photosynthesis.
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