Evidence map›Paper›PMID 27467453›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2017

EFHC1 variants in juvenile myoclonic epilepsy: reanalysis according to NHGRI and ACMG guidelines for assigning disease causality.

Julia N Bailey, Christopher Patterson, Laurence de Nijs, Reyna M Durón, Viet-Huong Nguyen, Miyabi Tanaka, Marco T Medina, Aurelio Jara-Prado, Iris E Martínez-Juárez, Adriana Ochoa and 13 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Research progress on transient receptor potential melastatin 2 channel in nervous system diseases.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Epilepsia open · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 8 countries.

Julia N BaileyEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.ORCID 0000-0003-1556-5904
Christopher PattersonEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.
Laurence de NijsGENESS International Consortium.
Reyna M DurónEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.
Viet-Huong NguyenEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.
Miyabi TanakaEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.ORCID 0000-0003-0469-054X
Marco T MedinaGENESS International Consortium.
Aurelio Jara-PradoGENESS International Consortium.
Iris E Martínez-JuárezGENESS International Consortium.
Adriana OchoaGENESS International Consortium.ORCID 0000-0001-9485-2658
Yolli MolinaGENESS International Consortium.
Toshimitsu SuzukiGENESS International Consortium.
María E AlonsoGENESS International Consortium.
Jenny E WightEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.
Yu-Chen LinEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.
Laura GuilhotoGENESS International Consortium.
Elza Marcia Targas YacubianGENESS International Consortium.
Jesús Machado-SalasEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.
Andrea DagaGENESS International Consortium.ORCID 0000-0001-8935-5489
Kazuhiro YamakawaGENESS International Consortium.ORCID 0000-0002-1478-4390
Thierry M GrisarGENESS International Consortium.
Bernard LakayeGENESS International Consortium.
Antonio V Delgado-EscuetaEpilepsy Genetics/Genomics Lab, Neurology and Research Services, VA GLAHS/UCLA, Los Angeles, California, USA.ORCID 0000-0002-1581-6999
Groupe des Écoles Nationales d'Économie et Statistique · FRVA West Los Angeles Medical Center · USUniversity of Liège · BENational Autonomous University of Honduras · HNRIKEN Center for Brain Science · JPUniversity of California, Los Angeles · USCentral American Technological University · HNChapman University · USDulbecco Telethon Institute · ITUCLA Health · US

Funding

Discovering More Juvenile Myoclonic Epilepsy Genes by a ConsortiumR01NS055057 · NINDS · BRENTWOOD BIOMEDICAL RESEARCH INSTITUTE · PI BAILEY, JULIA N, DELGADO-ESCUETA, ANTONIO V. · 2010 to 2014
$2.4M
Lafora's Progressive Myoclonus EpilepsyR01NS042376 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DELGADO-ESCUETA, ANTONIO V. · 2001 to 2003
$662k
CSRD VA I01 CX000743NINDS NIH HHS R01 NS042376NINDS NIH HHS R01 NS055057
6 · The paper itself

Abstract

purposeEFHC1 variants are the most common mutations in inherited myoclonic and grand mal clonic-tonic-clonic (CTC) convulsions of juvenile myoclonic epilepsy (JME). We reanalyzed 54 EFHC1 variants associated with epilepsy from 17 cohorts based on National Human Genome Research Institute (NHGRI) and American College of Medical Genetics and Genomics (ACMG) guidelines for interpretation of sequence variants.

methodsWe calculated Bayesian LOD scores for variants in coinheritance, unconditional exact tests and odds ratios (OR) in case-control associations, allele frequencies in genome databases, and predictions for conservation/pathogenicity. We reviewed whether variants damage EFHC1 functions, whether efhc1

resultsNine variants were classified as "pathogenic," 14 as "likely pathogenic," 9 as "benign," and 2 as "likely benign." Twenty variants of unknown significance had an insufficient number of ancestry-matched controls, but ORs exceeded 5 when compared with racial/ethnic-matched Exome Aggregation Consortium (ExAC) controls.

conclusionsNHGRI gene-level evidence and variant-level evidence establish EFHC1 as the first non-ion channel microtubule-associated protein whose mutations disturb R-type VDCC and TRPM2 calcium currents in overgrown synapses and dendrites within abnormally migrated dislocated neurons, thus explaining CTC convulsions and "microdysgenesis" neuropathology of JME.Genet Med 19 2, 144-156.

Indexed as

AnimalsCalcium-Binding ProteinsDendritesExomeGene FrequencyHumansMiceMice, KnockoutMutationMyoclonic Epilepsy, JuvenileNational Human Genome Research Institute (U.S.)NeuronsPedigreePolymorphism, Single NucleotideSeizuresSynapsesCalcium-Binding ProteinsEFHC1 protein, human

Identifiers

PMID27467453
OpenAlexW2481610918

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.