Evidence map›Paper›PMID 27467220›Full record

ArticlePloS one2016

Disulfide-Trapping Identifies a New, Effective Chemical Probe for Activating the Nuclear Receptor Human LRH-1 (NR5A2).

Felipe de Jesus Cortez, Miyuki Suzawa, Sam Irvy, John M Bruning, Elena Sablin, Matthew P Jacobson, Robert J Fletterick, Holly A Ingraham, Pamela M England

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Felipe de Jesus CortezDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94158, United States of America.
Miyuki SuzawaDepartment of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, California 94158, United States of America.
Sam IrvyChemistry and Chemical Biology Graduate Program, University of California San Francisco, San Francisco, California 94158, United States of America.
John M BruningPharmaceutical Sciences and Pharmacogenomics Graduate Program, University of California San Francisco, San Francisco, California 94158, United States of America.
Elena SablinDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California 94158, United States of America.
Matthew P JacobsonDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94158, United States of America.
Robert J FletterickDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California 94158, United States of America.
Holly A IngrahamDepartment of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, California 94158, United States of America.
Pamela M EnglandDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94158, United States of America.ORCID http://orcid.org/0000-0002-2308-1048
University of California, San Francisco · US

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer C. Lai · 1986 to 2026
$30.7M
UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
PHARMACEUTICAL SCIENCES AND PHARMACOGENOMICST32GM007175 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, KROETZ, DEANNA L · 1985 to 2021
$7.1M
Structures of Protein Complexes Regulating Transcription in Enbryonic Stem CellsU01GM094614 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CONKLIN, BRUCE R · 2010 to 2014
$5.7M
NIDDK NIH HHS P30 DK026743NIGMS NIH HHS K12 GM081266NIGMS NIH HHS T32 GM007175NIGMS NIH HHS U01 GM094614
6 · The paper itself

Abstract

Conventional efforts relying on high-throughput physical and virtual screening of large compound libraries have failed to yield high-efficiency chemical probes for many of the 48 human nuclear receptors. Here, we investigated whether disulfide-trapping, an approach new to nuclear receptors, would provide effective lead compounds targeting human liver receptor homolog 1 (hLRH-1, NR5A2). Despite the fact that hLRH-1 contains a large ligand binding pocket and binds phospholipids with high affinity, existing synthetic hLRH-1 ligands are of limited utility due to poor solubility, low efficacy or significant off-target effects. Using disulfide-trapping, we identified a lead compound that conjugates with remarkably high-efficiency to a native cysteine residue (Cys346) lining the hydrophobic cavity in the ligand binding domain of hLRH-1. Guided by computational modeling and cellular assays, the lead compound was elaborated into ligands PME8 and PME9 that bind hLRH-1 reversibly (no cysteine reactivity) and increase hLRH-1 activity in cells. When compared with the existing hLRH-1 synthetic agonist RJW100, both PME8 and PME9 showed comparable induction of the LRH-1 dependent target gene CYP24A1 in human HepG2 cells, beginning as early as 3 h after drug treatment. The induction is specific as siRNA-mediated knock-down of hLRH-1 renders both PME8 and PME9 ineffective. These data show that PME8 and PME9 are potent activators of hLRH-1 and suggest that with further development this lead series may yield useful chemical probes for manipulating LRH-1 activity in vivo.

Indexed as

DisulfidesHep G2 CellsHumansHydrophobic and Hydrophilic InteractionsLigandsMolecular Docking SimulationMolecular ProbesReceptors, Cytoplasmic and NuclearDisulfidesLigandsMolecular ProbesNR5A2 protein, humanReceptors, Cytoplasmic and Nuclear

Identifiers

PMID27467220
PMCPMC4965143
OpenAlexW2476309440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.