Evidence map›Paper›PMID 27466419›Full record

ArticleJournal of virology2016

Generation of Long-Lived Bone Marrow Plasma Cells Secreting Antibodies Specific for the HIV-1 gp41 Membrane-Proximal External Region in the Absence of Polyreactivity.

Luke R Donius, Yuxing Cheng, Jaewon Choi, Zhen-Yu J Sun, Melissa Hanson, Michael Zhang, Todd M Gierahn, Susanna Marquez, Mohammed Uduman, Steven H Kleinstein and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. Review
  10. Article
  11. Structure of the membrane proximal external region of HIV-1 envelope glycoprotein.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Review
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Luke R DoniusLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Yuxing ChengLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Jaewon ChoiLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Zhen-Yu J SunDepartment of Biological Chemistry & Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Melissa HansonDepartments of Materials Science and Engineering and Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Michael ZhangDepartments of Materials Science and Engineering and Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Todd M GierahnKoch Institute for Integrative Cancer Research at MIT, Cambridge, Massachusetts, USA.
Susanna MarquezDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Mohammed UdumanDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Steven H KleinsteinDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA Department of Immunology, Yale School of Medicine, and Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.
Darrell IrvineDepartments of Materials Science and Engineering and Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA Koch Institute for Integrative Cancer Research at MIT, Cambridge, Massachusetts, USA Howard Hughes Medical Institute, Chevy Chase, Maryland, USA.
J Christopher LoveKoch Institute for Integrative Cancer Research at MIT, Cambridge, Massachusetts, USA.
Ellis L ReinherzLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Mikyung KimLaboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA Department of Dermatology, Harvard Medical School, Boston, Massachusetts, USA mikyung_kim@dfci.harvard.edu.
Dana-Farber Cancer Institute · USYale University · USHarvard University · USKoch Institute for Integrative Cancer Research At MITMassachusetts Institute of Technology · USAllen Institute · US

Funding

Structural Approches to HIV-1 Immunogen Design for BNAb GenerationU19AI091693 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2010 to 2015
$9.9M
Targeting Immunogenicity to the MPER Hinge and C-helix for BNAb ElicitationP01AI126901 · NIAID · DANA-FARBER CANCER INST · PI IRVINE, DARRELL J · 2016 to 2020
$9.2M
COMPUTATIONAL TOOLS FOR THE ANALYSIS OF HIGH-THROUGHPUT IMMUNOGLOBULIN SEQUENCING EXPERIMENTSR01AI104739 · NIAID · YALE UNIVERSITY · PI KLEINSTEIN, STEVEN H. · 2014 to 2022
$3.6M
Howard Hughes Medical InstituteNIAID NIH HHS P01 AI126901NIAID NIH HHS R01 AI104739NIAID NIH HHS U19 AI091693
6 · The paper itself

Abstract

unlabelledAn effective preventive vaccine is highly sought after in order to stem the current HIV-1 pandemic. Both conservation of contiguous gp41 membrane-proximal external region (MPER) amino acid sequences across HIV-1 clades and the ability of anti-MPER broadly neutralizing antibodies (BNAbs) to block viral hemifusion/fusion establish the MPER as a prime vaccination target. In earlier studies, we described the development of an MPER vaccine formulation that takes advantage of liposomes to array the MPER on a lipid bilayer surface, paralleling its native configuration on the virus membrane while also incorporating molecular adjuvant and CD4 T cell epitope cargo. Here we demonstrate that several immunizations with MPER/liposomes induce high levels of bone marrow long-lived plasma cell (LLPC) antibody production. Single-cell immunoglobulin gene retrieval analysis shows that these plasma cells are derived from a germ line repertoire of B cells with a diverse representation of immunoglobulin genes, exhibiting antigen-driven positive selection. Characterization of LLPC recombinant monoclonal antibodies (rMAbs) indicates that antigen recognition is achieved through convergence on a common epitopic focus by utilizing various complementarity-determining region H3 (CDRH3) lengths. Importantly, the vast majority of rMAbs produced from these cells lack polyreactivity yet manifest antigen specificity in the context of lipids, shaping MPER-specific paratopes through selective pressure. Taken together, these findings demonstrate that the MPER is a vaccine target with minimal risk of generating off-target autoimmunity. IMPORTANCE: A useful vaccine must generate desired long-term, antigen-specific antibody responses devoid of polyreactivity or autoreactivity. The common polyreactive features of some HIV-1 BNAbs have raised concern about elicitation of anti-MPER antibodies. Utilizing single-LLPC repertoire analysis and biophysical characterization of anti-MPER rMAbs, we show that their fine specificities require a structural fitness of the antibody combining site involving heavy and light chain variable domains shaped by somatic hypermutation and affinity maturation of B cells in the germinal center. Perhaps more importantly, our results demonstrate that the majority of MPER-specific antibodies are not inherently polyspecific and/or autoreactive, suggesting that polyreactivity of MPER-specific antibodies is separable from their antigen specificity.

Indexed as

Antibodies, MonoclonalEpitopes, B-LymphocyteHIV AntibodiesHIV AntigensHIV Envelope Protein gp41Membrane LipidsPlasma CellsAntibodies, MonoclonalEpitopes, B-Lymphocytegp41 protein, Human immunodeficiency virus 1HIV AntibodiesHIV AntigensHIV Envelope Protein gp41Membrane Lipids

Identifiers

PMID27466419
PMCPMC5021391
OpenAlexW2518690647

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.