Evidence map›Paper›PMID 27466365›Full record

ArticleThe Journal of biological chemistry2016

Sucrose Production Mediated by Lipid Metabolism Suppresses the Physical Interaction of Peroxisomes and Oil Bodies during Germination of Arabidopsis thaliana.

Songkui Cui, Yasuko Hayashi, Masayoshi Otomo, Shoji Mano, Kazusato Oikawa, Makoto Hayashi, Mikio Nishimura

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Molecular Machinery of Lipid Droplet Degradation and Turnover in Plants.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Characterization and functional analysis ofFrontiers in plant science · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Seed Germination in Oil Palm (International journal of molecular sciences · 2020
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Songkui CuiFrom the Department of Cell Biology, National Institute for Basic Biology, Myodaiji-cho, Okazaki 444-8585, Japan, the Department of Basic Biology, School of Life Science, SOKENDAI (Graduate University for Advanced Studies), Myodaiji-cho, Okazaki 444-8585, Japan, the RIKEN Center for Sustainable Resource Science, RIKEN, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan, the Graduate School of Biological Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan, and.ORCID 0000-0001-7777-6681
Yasuko Hayashithe Graduate School of Science and Technology, Niigata University, 8050 Ikarashi, Ninotyou, Niigata 950-2181, Japan.
Masayoshi Otomothe Graduate School of Science and Technology, Niigata University, 8050 Ikarashi, Ninotyou, Niigata 950-2181, Japan.
Shoji ManoFrom the Department of Cell Biology, National Institute for Basic Biology, Myodaiji-cho, Okazaki 444-8585, Japan, the Department of Basic Biology, School of Life Science, SOKENDAI (Graduate University for Advanced Studies), Myodaiji-cho, Okazaki 444-8585, Japan, the Laboratory of Biological Diversity, Department of Evolutionary Biology and Biodiversity, National Institute for Basic Biology, Myodaiji-cho, Okazaki 444-8585, Japan.
Kazusato Oikawathe Department of Applied Biological Chemistry, Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan.
Makoto Hayashithe Department of Bioscience, Nagahama Institute of Bio-Science and Technology, 1266 Tamura-Cho, Nagahama 526-0829, Japan.
Mikio NishimuraFrom the Department of Cell Biology, National Institute for Basic Biology, Myodaiji-cho, Okazaki 444-8585, Japan, mikosome@nibb.ac.jp.
National Institute for Basic Biology · JPNiigata University · JPNagahama Institute of Bio-Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Physical interaction between organelles is a flexible event and essential for cells to adapt rapidly to environmental stimuli. Germinating plants utilize oil bodies and peroxisomes to mobilize storage lipids for the generation of sucrose as the main energy source. Although membrane interaction between oil bodies and peroxisomes has been widely observed, its underlying molecular mechanism is largely unknown. Here we present genetic evidence for control of the physical interaction between oil bodies and peroxisomes. We identified alleles of the sdp1 mutant altered in oil body morphology. This mutant accumulates bigger and more oil body aggregates compared with the wild type and showed defects in lipid mobilization during germination. SUGAR DEPENDENT 1 (SDP1) encodes major triacylglycerol lipase in Arabidopsis Interestingly, sdp1 seedlings show enhanced physical interaction between oil bodies and peroxisomes compared with the wild type, whereas exogenous sucrose supplementation greatly suppresses the interaction. The same phenomenon occurs in the peroxisomal defective 1 (ped1) mutant, defective in lipid mobilization because of impaired peroxisomal β-oxidation, indicating that sucrose production is a key factor for oil body-peroxisomal dissociation. Peroxisomal dissociation and subsequent release from oil bodies is dependent on actin filaments. We also show that a peroxisomal ATP binding cassette transporter, PED3, is the potential anchor protein to the membranes of these organelles. Our results provide novel components linking lipid metabolism and oil body-peroxisome interaction whereby sucrose may act as a negative signal for the interaction of oil bodies and peroxisomes to fine-tune lipolysis.

Indexed as

Adenosine TriphosphatasesArabidopsisArabidopsis ProteinsATP-Binding Cassette TransportersCarboxylic Ester HydrolasesGerminationLipid DropletsLipid MetabolismPeroxisomesSucroseAdenosine TriphosphatasesArabidopsis ProteinsAt4g39850 protein, ArabidopsisATP-Binding Cassette TransportersCarboxylic Ester HydrolasesSDP1 protein, ArabidopsisSucroseABC transporterlipid dropletlipolysismembraneoil bodyorganelleperoxisomesucrose production

Identifiers

PMID27466365
PMCPMC5025665
OpenAlexW2478129714

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.