Evidence map›Paper›PMID 27465315›Full record

ArticleJournal of the American Chemical Society2016

Organometallic Complex Formed by an Unconventional Radical S-Adenosylmethionine Enzyme.

Min Dong, Masaki Horitani, Boris Dzikovski, Maria-Eirini Pandelia, Carsten Krebs, Jack H Freed, Brian M Hoffman, Hening Lin

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

  1. The BJournal of inorganic biochemistry · 2022
    Article
  2. The asymmetric function of Dph1-Dph2 heterodimer in diphthamide biosynthesis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  3. Analysis of Electrochemical Properties ofJournal of the American Chemical Society · 2019
    Article
  4. Review
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Min DongDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Masaki HoritaniDepartment of Chemistry, Northwestern University , Evanston, Illinois 60208, United States.
Boris DzikovskiDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Maria-Eirini PandeliaDepartment of Biochemistry, Brandeis University , Waltham, Massachusetts 02453, United States.
Carsten KrebsDepartment of Chemistry and Department of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Jack H FreedDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Brian M HoffmanDepartment of Chemistry, Northwestern University , Evanston, Illinois 60208, United States.
Hening LinDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Cornell University · USNorthwestern University · USBrandeis University · USPennsylvania State University · US

Funding

TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
Coboglobins-Cobalt-Substituted Hemoglobins and MyoglobinR01GM111097 · NIGMS · NORTHWESTERN UNIVERSITY · PI HOFFMAN, BRIAN M · 2014 to 2025
$6.7M
Diphthamide biosynthesisR01GM088276 · NIGMS · CORNELL UNIVERSITY · PI LIN, HENING · 2009 to 2017
$2.5M
NIGMS NIH HHS P41 GM103521NIGMS NIH HHS R01 GM088276NIGMS NIH HHS R01 GM111097
6 · The paper itself

Abstract

Pyrococcus horikoshii Dph2 (PhDph2) is an unusual radical S-adenosylmethionine (SAM) enzyme involved in the first step of diphthamide biosynthesis. It catalyzes the reaction by cleaving SAM to generate a 3-amino-3-carboxypropyl (ACP) radical. To probe the reaction mechanism, we synthesized a SAM analogue (SAMCA), in which the ACP group of SAM is replaced with a 3-carboxyallyl group. SAMCA is cleaved by PhDph2, yielding a paramagnetic (S = 1/2) species, which is assigned to a complex formed between the reaction product, α-sulfinyl-3-butenoic acid, and the [4Fe-4S] cluster. Electron-nuclear double resonance (ENDOR) measurements with (13)C and (2)H isotopically labeled SAMCA support a π-complex between the C═C double bond of α-sulfinyl-3-butenoic acid and the unique iron of the [4Fe-4S] cluster. This is the first example of a radical SAM-related [4Fe-4S](+) cluster forming an organometallic complex with an alkene, shedding additional light on the mechanism of PhDph2 and expanding our current notions for the reactivity of [4Fe-4S] clusters in radical SAM enzymes.

Indexed as

AlkenesAnisotropyButyratesCarbonCatalysisChromatography, High Pressure LiquidElectronsElectron Spin Resonance SpectroscopyEnzymesHistidineIronIron-Sulfur ProteinsOrganometallic CompoundsPyrococcus horikoshiiS-Adenosylmethionine3-butenoic acidAlkenesButyratesCarbondiphthamideEnzymesHistidineIronIron-Sulfur ProteinsOrganometallic CompoundsS-Adenosylmethionine

Identifiers

PMID27465315
PMCPMC5068486
OpenAlexW2506842431

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.