Evidence map›Paper›PMID 27463841›Full record

ArticleAutophagy2016

Quantitative chemical proteomics profiling of de novo protein synthesis during starvation-mediated autophagy.

Jigang Wang, Jianbin Zhang, Yew-Mun Lee, Pin-Lang Koh, Shukie Ng, Feichao Bao, Qingsong Lin, Han-Ming Shen

Abstract read
In one paragraph

Article in Autophagy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  14. Review
  15. What We Learned From Big Data for Autophagy Research.Frontiers in cell and developmental biology · 2018
    Review
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jigang Wanga Department of Physiology , Yong Loo Lin School of Medicine, National University of Singapore , Singapore.
Jianbin Zhanga Department of Physiology , Yong Loo Lin School of Medicine, National University of Singapore , Singapore.
Yew-Mun Leeb Department of Biological Sciences , National University of Singapore , Singapore.
Pin-Lang Kohb Department of Biological Sciences , National University of Singapore , Singapore.
Shukie Nga Department of Physiology , Yong Loo Lin School of Medicine, National University of Singapore , Singapore.
Feichao Baoc Department of Thoracic Surgery , First Affiliated Hospital of Zhejiang University , Hangzhou , China.
Qingsong Linb Department of Biological Sciences , National University of Singapore , Singapore.
Han-Ming Shena Department of Physiology , Yong Loo Lin School of Medicine, National University of Singapore , Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy is an intracellular degradation mechanism in response to nutrient starvation. Via autophagy, some nonessential cellular constituents are degraded in a lysosome-dependent manner to generate biomolecules that can be utilized for maintaining the metabolic homeostasis. Although it is known that under starvation the global protein synthesis is significantly reduced mainly due to suppression of MTOR (mechanistic target of rapamycin serine/threonine kinase), emerging evidence demonstrates that de novo protein synthesis is involved in the autophagic process. However, characterizing these de novo proteins has been an issue with current techniques. Here, we developed a novel method to identify newly synthesized proteins during starvation-mediated autophagy by combining bio-orthogonal noncanonical amino acid tagging (BONCAT) and isobaric tags for relative and absolute quantitation (iTRAQ

Indexed as

AutophagyProtein BiosynthesisAlanineGene OntologyHeLa CellsHumansProteomicsReproducibility of ResultsSignal TransductionStaining and LabelingTranscription, GeneticAlanineazidohomoalanineAHAautophagyBONCATde novo protein synthesisiTRAQproteomics

Identifiers

PMID27463841
PMCPMC5079677

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.