Evidence map›Paper›PMID 27463681›Full record

ArticlePloS one2016

Levels of DNA Methylation Vary at CpG Sites across the BRCA1 Promoter, and Differ According to Triple Negative and "BRCA-Like" Status, in Both Blood and Tumour DNA.

Sarah L Daniels, George J Burghel, Philip Chambers, Shadi Al-Baba, Daniel D Connley, Ian W Brock, Helen E Cramp, Olena Dotsenko, Octavia Wilks, Lynda Wyld and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Genes · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Germline promoter hypermethylation in BRCA1 and BRCA2 genes is not present in hereditary breast cancer patients.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2018
    Article
  9. Methylation Profiles of BRCA1, RASSF1A and GSTP1 in Vietnamese Women with Breast CancerAsian Pacific journal of cancer prevention : APJCP · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Sarah L DanielsAcademic Unit of Molecular Oncology, Department of Oncology and Metabolism, University of Sheffield, Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.ORCID http://orcid.org/0000-0001-9452-3344
George J BurghelAcademic Unit of Molecular Oncology, Department of Oncology and Metabolism, University of Sheffield, Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Philip ChambersLeeds Institute of Cancer and Pathology, Section of Pathology and Tumour Biology, Wellcome Trust Brenner Building, University of Leeds, St. James's University Hospital, Beckett Street, Leeds, LS9 7TF, United Kingdom.
Shadi Al-BabaSheffield Diagnostic Genetics Service, Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield, S10 2TH, United Kingdom.
Daniel D ConnleyAcademic Unit of Molecular Oncology, Department of Oncology and Metabolism, University of Sheffield, Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Ian W BrockAcademic Unit of Molecular Oncology, Department of Oncology and Metabolism, University of Sheffield, Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Helen E CrampAcademic Unit of Molecular Oncology, Department of Oncology and Metabolism, University of Sheffield, Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Olena DotsenkoDepartment of Histopathology, Royal Hallamshire Hospital, Sheffield Teaching Hospitals NHS Foundation Trust, Glossop Road, Sheffield, S10 2JF, United Kingdom.
Octavia WilksAcademic Unit of Pathology, Department of Neuroscience, Faculty of Medicine, Dentistry & Health, The University of Sheffield, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Lynda WyldAcademic Unit of Surgical Oncology, University of Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Simon S CrossAcademic Unit of Pathology, Department of Neuroscience, Faculty of Medicine, Dentistry & Health, The University of Sheffield, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
Angela CoxAcademic Unit of Molecular Oncology, Department of Oncology and Metabolism, University of Sheffield, Sheffield Medical School, Beech Hill Road, Sheffield, S10 2RX, United Kingdom.
University of Sheffield · GBRoyal Hallamshire Hospital · GBSheffield Children's NHS Foundation Trust · GBUniversity of Leeds · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triple negative breast cancer is typically an aggressive and difficult to treat subtype. It is often associated with loss of function of the BRCA1 gene, either through mutation, loss of heterozygosity or methylation. This study aimed to measure methylation of the BRCA1 gene promoter at individual CpG sites in blood, tumour and normal breast tissue, to assess whether levels were correlated between different tissues, and with triple negative receptor status, histopathological scoring for BRCA-like features and BRCA1 protein expression. Blood DNA methylation levels were significantly correlated with tumour methylation at 9 of 11 CpG sites examined (p<0.0007). The levels of tumour DNA methylation were significantly higher in triple negative tumours, and in tumours with high BRCA-like histopathological scores (10 of 11 CpG sites; p<0.01 and p<0.007 respectively). Similar results were observed in blood DNA (6 of 11 CpG sites; p<0.03 and 7 of 11 CpG sites; p<0.02 respectively). This study provides insight into the pattern of CpG methylation across the BRCA1 promoter, and supports previous studies suggesting that tumours with BRCA1 promoter methylation have similar features to those with BRCA1 mutations, and therefore may be suitable for the same targeted therapies.

Indexed as

DNA MethylationAdultAgedAged, 80 and overBiomarkers, TumorBRCA1 ProteinCpG IslandsDNA, NeoplasmFemaleHumansMiddle AgedPromoter Regions, GeneticTriple Negative Breast NeoplasmsBiomarkers, TumorBRCA1 ProteinBRCA1 protein, humanDNA, Neoplasm

Identifiers

PMID27463681
PMCPMC4963032
OpenAlexW2494719431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.