Evidence map›Paper›PMID 27463675›Full record

ArticleScience (New York, N.Y.)2016

Accurate design of megadalton-scale two-component icosahedral protein complexes.

Jacob B Bale, Shane Gonen, Yuxi Liu, William Sheffler, Daniel Ellis, Chantz Thomas, Duilio Cascio, Todd O Yeates, Tamir Gonen, Neil P King and 1 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 312 papers.

0numbers the graph read from it
0cells of the map it votes in
312citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

312 citing papers in PubMed.

  1. Trial
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  12. Chemical reviews · 2026
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  16. Article
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  20. Review

252 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jacob B BaleDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. Graduate Program in Molecular and Cellular Biology, University of Washington, Seattle, WA 98195, USA.
Shane GonenDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Yuxi LiuDepartment of Chemistry and Biochemistry, University of California-Los Angeles (UCLA), Los Angeles, CA 90095, USA.
William ShefflerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Daniel EllisInstitute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Chantz ThomasDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA.
Duilio CascioDepartment of Chemistry and Biochemistry, University of California-Los Angeles (UCLA), Los Angeles, CA 90095, USA. UCLA-Department of Energy (DOE) Institute for Genomics and Proteomics, Los Angeles, CA 90095, USA. Department of Biological Chemistry and Molecular Biology Institute, UCLA, Los Angeles, CA 90095, USA.
Todd O YeatesDepartment of Chemistry and Biochemistry, University of California-Los Angeles (UCLA), Los Angeles, CA 90095, USA. UCLA-Department of Energy (DOE) Institute for Genomics and Proteomics, Los Angeles, CA 90095, USA.
Tamir GonenJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Neil P KingDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. Institute for Protein Design, University of Washington, Seattle, WA 98195, USA. neilking@uw.edu dabaker@uw.edu.
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. Institute for Protein Design, University of Washington, Seattle, WA 98195, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA. neilking@uw.edu dabaker@uw.edu.

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Howard Hughes Medical InstituteNCRR NIH HHS 5P41RR015301-10NCRR NIH HHS P41 RR015301NIGMS NIH HHS 8 P41 GM103403-10NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01GM105404
6 · The paper itself

Abstract

Nature provides many examples of self- and co-assembling protein-based molecular machines, including icosahedral protein cages that serve as scaffolds, enzymes, and compartments for essential biochemical reactions and icosahedral virus capsids, which encapsidate and protect viral genomes and mediate entry into host cells. Inspired by these natural materials, we report the computational design and experimental characterization of co-assembling, two-component, 120-subunit icosahedral protein nanostructures with molecular weights (1.8 to 2.8 megadaltons) and dimensions (24 to 40 nanometers in diameter) comparable to those of small viral capsids. Electron microscopy, small-angle x-ray scattering, and x-ray crystallography show that 10 designs spanning three distinct icosahedral architectures form materials closely matching the design models. In vitro assembly of icosahedral complexes from independently purified components occurs rapidly, at rates comparable to those of viral capsids, and enables controlled packaging of molecular cargo through charge complementarity. The ability to design megadalton-scale materials with atomic-level accuracy and controllable assembly opens the door to a new generation of genetically programmable protein-based molecular machines.

Indexed as

CapsidCrystallography, X-RayGenome, ViralMicroscopy, ElectronModels, MolecularMolecular WeightMultiprotein ComplexesNanostructuresProtein EngineeringProtein SubunitsScattering, Small AngleViral ProteinsX-Ray DiffractionMultiprotein ComplexesProtein SubunitsViral Proteins

Identifiers

PMID27463675
PMCPMC5485857

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.