Evidence map›Paper›PMID 27463135›Full record

ArticleBiophysical journal2016

Two Deafness-Causing Actin Mutations (DFNA20/26) Have Allosteric Effects on the Actin Structure.

Lauren Jepsen, Karina A Kruth, Peter A Rubenstein, David Sept

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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  6. Essential nucleotide- and protein-dependent functions ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Lauren JepsenBioinformatics Graduate Program, University of Michigan, Ann Arbor, Michigan; Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan.
Karina A KruthDepartment of Biochemistry, University of Iowa Carver College of Medicine, Iowa City, Iowa.
Peter A RubensteinDepartment of Biochemistry, University of Iowa Carver College of Medicine, Iowa City, Iowa.
David SeptDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan. Electronic address: dsept@umich.edu.
University of Iowa · USUniversity of Michigan · US

Funding

Biochemical consequences of Deafness-causing actin mutationsR01DC008803 · NIDCD · UNIVERSITY OF IOWA · PI RUBENSTEIN, PETER A. · 2008 to 2012
$1.8M
Biochemical Consequences of Deafness-causing Actin MutationsR55DC008803 · NIDCD · UNIVERSITY OF IOWA · PI RUBENSTEIN, PETER A. · 2007 to 2007
$100k
NIDCD NIH HHS R01 DC008803NIDCD NIH HHS R55 DC008803
6 · The paper itself

Abstract

Point mutations in γ-cytoplasmic actin have been shown to result in autosomal-dominant, nonsyndromic, early-onset deafness. Two mutations at the same site, K118M and K118N, provide a unique opportunity to compare the effects of two dissimilar amino acid substitutions that produce a similar phenotype in humans. K118 resides in a helix that runs from K113 to T126, and mutations that alter the position, dynamics, and/or biochemistry of this helix can result in a wide range of pathologies. Using a combination of computational and experimental studies, both employing yeast actin, we find that these mutations at K118 result in changes in the structure and dynamics of the DNase-I loop, alterations in the structure of the H73 loop as well as the side-chain orientations of W79 and W86, changes in nucleotide exchange rates, and significant shifts in the twist of the actin monomer. Interestingly, in the case of K118N, the twist of the monomer is nearly identical to that of the F-actin protomer, and in vitro polymerization assays show that this mutation results in faster polymerization. Taken together, these results indicate that mutations at this site give rise to a series of small changes that can be tolerated in vivo but result in misregulation of actin assembly and dynamics.

Indexed as

Point MutationAcrylamideActinsAllosteric RegulationDeafnessMolecular Dynamics SimulationNucleotidesPhosphatesProtein Conformation, alpha-HelicalAcrylamideActinsNucleotidesPhosphates

Identifiers

PMID27463135
PMCPMC4968419
OpenAlexW2476218343

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.