Evidence map›Paper›PMID 27462443›Full record

ArticleCell discovery2016

Involvement of PARP1 in the regulation of alternative splicing.

Elena Matveeva, John Maiorano, Qingyang Zhang, Abdallah M Eteleeb, Paolo Convertini, Jing Chen, Vittoria Infantino, Stefan Stamm, Jiping Wang, Eric C Rouchka and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell discovery, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
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  11. Epigenomic reprogramming in iAs-mediated carcinogenesis.Advances in pharmacology (San Diego, Calif.) · 2023
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  15. Multiomics analysis of the NADGenes & development · 2022
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  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Elena MatveevaDepartment of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, KY, USA.
John MaioranoDepartment of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, KY, USA.
Qingyang ZhangDepartment of Molecular Biosciences, Northwestern University , Evanston, IL, USA.
Abdallah M EteleebDepartment of Computer Engineering and Computer Science, University of Louisville , Louisville, KY, USA.
Paolo ConvertiniDepartment of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY, USA; Department of Science, University of Basilicata, Potenza, Italy.ORCID 0000-0001-7250-0678
Jing ChenDepartment of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, KY, USA.
Vittoria InfantinoDepartment of Science, University of Basilicata , Potenza, Italy.
Stefan StammDepartment of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, KY, USA.
Jiping WangDepartment of Molecular Biosciences, Northwestern University , Evanston, IL, USA.
Eric C RouchkaDepartment of Computer Engineering and Computer Science, University of Louisville , Louisville, KY, USA.
Yvonne N Fondufe-MittendorfDepartment of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, KY, USA.
University of Kentucky · USNorthwestern University · USUniversity of Louisville · USUniversity of Basilicata · IT

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
UNDERSTANDING THE MOLECULAR BASIS OF EPIGENETIC TRANSCRIPTIONAL SILENCINGP20RR020171 · NCRR · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2004 to 2011
$16.5M
The role of chromatin structural and epigenetic changes in arsenic-induced gene expressionR01ES024478 · NIEHS · UNIVERSITY OF KENTUCKY · PI FONDUFE-MITTENDORF, YVONNE NSOKIKA · 2015 to 2019
$1.8M
NCRR NIH HHS P20 RR020171NIEHS NIH HHS R01 ES024478NIGMS NIH HHS P20 GM103436
6 · The paper itself

Abstract

Specialized chromatin structures such as nucleosomes with specific histone modifications decorate exons in eukaryotic genomes, suggesting a functional connection between chromatin organization and the regulation of pre-mRNA splicing. Through profiling the functional location of Poly (ADP) ribose polymerase, we observed that it is associated with the nucleosomes at exon/intron boundaries of specific genes, suggestive of a role for this enzyme in alternative splicing. Poly (ADP) ribose polymerase has previously been implicated in the PARylation of splicing factors as well as regulation of the histone modification H3K4me3, a mark critical for co-transcriptional splicing. In light of these studies, we hypothesized that interaction of the chromatin-modifying factor, Poly (ADP) ribose polymerase with nucleosomal structures at exon-intron boundaries, might regulate pre-mRNA splicing. Using genome-wide approaches validated by gene-specific assays, we show that depletion of PARP1 or inhibition of its PARylation activity results in changes in alternative splicing of a specific subset of genes. Furthermore, we observed that PARP1 bound to RNA, splicing factors and chromatin, suggesting that Poly (ADP) ribose polymerase serves as a gene regulatory hub to facilitate co-transcriptional splicing. These studies add another function to the multi-functional protein, Poly (ADP) ribose polymerase, and provide a platform for further investigation of this protein's function in organizing chromatin during gene regulatory processes.

Indexed as

chromatincotranscriptional splicingEpigeneticsgene regulationPARP1

Identifiers

PMID27462443
PMCPMC4860959
OpenAlexW2510959831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.