Evidence map›Paper›PMID 27462419›Full record

ArticleCell discovery2015

eIF2 interactions with initiator tRNA and eIF2B are regulated by post-translational modifications and conformational dynamics.

Victoria Beilsten-Edmands, Yuliya Gordiyenko, Jocky Ck Kung, Shabaz Mohammed, Carla Schmidt, Carol V Robinson

Open access · goldAbstract read
In one paragraph

Article in Cell discovery, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Signaling plasticity in the integrated stress response.Frontiers in cell and developmental biology · 2023
    Review
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  7. Review
  8. Article
  9. Review
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  12. Crosslinking mass spectrometry: A link between structural biology and systems biology.Protein science : a publication of the Protein Society · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Victoria Beilsten-EdmandsDepartment of Chemistry, University of Oxford , Oxford, UK.
Yuliya GordiyenkoDepartment of Chemistry, University of Oxford , Oxford, UK.
Jocky Ck KungDepartment of Chemistry, University of Oxford , Oxford, UK.
Shabaz MohammedDepartment of Chemistry, University of Oxford, Oxford, UK; Department of Biochemistry, University of Oxford, Oxford, UK.
Carla SchmidtDepartment of Chemistry, University of Oxford , Oxford, UK.
Carol V RobinsonDepartment of Chemistry, University of Oxford , Oxford, UK.
University of Oxford · GB

Funding

European Research Council 268851
6 · The paper itself

Abstract

Translation of messenger RNA (mRNA) into proteins is key to eukaryotic gene expression and begins when initiation factor-2 (eIF2) delivers methionyl initiator tRNA (Met-tRNAi (Met)) to ribosomes. This first step is controlled by eIF2B mediating guanine nucleotide exchange on eIF2. We isolated eIF2 from yeast and used mass spectrometry to study the intact complex, and found that eIF2β is the most labile of the three subunits (eIF2α/β/γ). We then compared conformational dynamics of the ternary complex eIF2:GTP:Met-tRNAi (Met) with apo eIF2 using comparative chemical cross-linking. Results revealed high conformational dynamics for eIF2α in apo eIF2 while in the ternary complex all three subunits are constrained. Novel post-translational modifications identified here in both eIF2 and eIF2B were combined with established sites, and located within protein sequences and homology models. We found clustering at subunit interfaces and highly phosphorylated unstructured regions, at the N-terminus of eIF2β, and also between the eIF2Bε core and catalytic domains. We propose that modifications of these unstructured regions have a key role in regulating interactions between eIF2 and eIF2B, as well as other eIFs.

Indexed as

acetylationeukaryotic translation initiationmass spectrometryphosphorylation

Identifiers

PMID27462419
PMCPMC4860841
OpenAlexW2520772270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.