Evidence map›Paper›PMID 27461489›Full record

ArticleBMC genomics2016

Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata).

E Sarropoulou, A Tsalafouta, A Y M Sundaram, G D Gilfillan, G Kotoulas, N Papandroulakis, M Pavlidis

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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  7. Genomic analysis ofCommunications biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

E SarropoulouInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Gournes Pediados, Heraklion, Crete, 71003, Greece. sarris@hcmr.gr.
A TsalafoutaDepartment of Biology, University of Crete, Heraklion, Crete, 70013, Greece.
A Y M SundaramDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
G D GilfillanDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
G KotoulasInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Gournes Pediados, Heraklion, Crete, 71003, Greece.
N PapandroulakisInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Gournes Pediados, Heraklion, Crete, 71003, Greece.
M PavlidisDepartment of Biology, University of Crete, Heraklion, Crete, 70013, Greece.
Hellenic Centre for Marine Research · GRUniversity of Crete · GRUniversity of Oslo · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTeleosts are exposed to a broad range of external stimuli, which may be either of acute or chronic nature. The larval phase of certain fish species offer a unique opportunity to study the interactions between genes and environmental factors during early life. The present study investigates the effects of early-life events, applied at different time points of early ontogeny (first feeding, flexion and development of all fins; Phase 1) as well as on the subsequent juvenile stage after the application of an additional acute stressor (Phase 2) in the gilthead sea bream (Sparus aurata), a commercially important European aquaculture species. Animal performance, the cortisol response and gene expression patterns during early development as well as on the subsequent phases (juveniles) after the application of additional acute stressors were investigated.

resultsSignificant differences on fish performance were found only for juveniles exposed to early-life events at the phase of the formation of all fins. On the transcriptome level distinct expression patterns were obtained for larvae as well as for juveniles with the most divergent expression pattern found to be again at the phase of the development of all fins, which showed to have also an impact later on in the acute stress response of juveniles.

conclusionsThe present study showed that applying an early-life protocol, characterized by the unpredictable, variable and moderate intensity of the applied stimuli provides a relative realistic model to evaluate the impact of daily aquaculture practices on fish performance. In addition, the power of investigating global gene expression patterns is shown, providing significant insights regarding the response of early-life events during development and as juveniles after the application of extra acute stressors.

Indexed as

TranscriptomeAnimalsCluster AnalysisComputational BiologyGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingHydrocortisoneLife Cycle StagesMolecular Sequence AnnotationSea BreamStress, PhysiologicalHydrocortisoneDEGEarly-life eventsRNAseqSparus aurataStress

Identifiers

PMID27461489
PMCPMC4962366
OpenAlexW2482110097

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.