Evidence map›Paper›PMID 27460417›Full record

ArticleScientific reports2016

Identification of a novel inactivating mutation in Isocitrate Dehydrogenase 1 (IDH1-R314C) in a high grade astrocytoma.

Sanne A M van Lith, Anna C Navis, Krissie Lenting, Kiek Verrijp, Jan T G Schepens, Wiljan J A J Hendriks, Nil A Schubert, Hanka Venselaar, Ron A Wevers, Arno van Rooij and 6 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Emerging Role of TCA Cycle-Related Enzymes in Human Diseases.International journal of molecular sciences · 2021
    Review
  4. Kinins in Glioblastoma Microenvironment.Cancer microenvironment : official journal of the International Cancer Microenvironment Society · 2019
    Article
  5. Cancer & metabolism · 2019
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Sanne A M van LithDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Anna C NavisDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Krissie LentingDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Kiek VerrijpDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Jan T G SchepensDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, The Netherlands.
Wiljan J A J HendriksDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, The Netherlands.
Nil A SchubertDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Hanka VenselaarCentre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, The Netherlands.
Ron A WeversTranslational Metabolic Laboratory, Department Laboratory Medicine, Radboudumc, Nijmegen, The Netherlands.
Arno van RooijTranslational Metabolic Laboratory, Department Laboratory Medicine, Radboudumc, Nijmegen, The Netherlands.
Pieter WesselingDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Remco J MolenaarDepartment of Cell Biology and Histology, Academic Medical Center, Amsterdam, The Netherlands.
Cornelis J F van NoordenDepartment of Cell Biology and Histology, Academic Medical Center, Amsterdam, The Netherlands.
Stefan PuschClinical Cooperation Unit Neuropathology, German Cancer Center (DKFZ), Heidelberg, Germany.
Bastiaan TopsDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
William P J LeendersDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of low-grade and secondary high-grade gliomas carry heterozygous hotspot mutations in cytosolic isocitrate dehydrogenase 1 (IDH1) or the mitochondrial variant IDH2. These mutations mostly involve Arg132 in IDH1, and Arg172 or Arg140 in IDH2. Whereas IDHs convert isocitrate to alpha-ketoglutarate (α-KG) with simultaneous reduction of NADP(+) to NADPH, these IDH mutants reduce α-KG to D-2-hydroxyglutarate (D-2-HG) while oxidizing NADPH. D-2-HG is a proposed oncometabolite, acting via competitive inhibition of α-KG-dependent enzymes that are involved in metabolism and epigenetic regulation. However, much less is known about the implications of the metabolic stress, imposed by decreased α-KG and NADPH production, for tumor biology. We here present a novel heterozygous IDH1 mutation, IDH1(R314C), which was identified by targeted next generation sequencing of a high grade glioma from which a mouse xenograft model and a cell line were generated. IDH1(R314C) lacks isocitrate-to-α-KG conversion activity due to reduced affinity for NADP(+), and differs from the IDH1(R132) mutants in that it does not produce D-2-HG. Because IDH1(R314C) is defective in producing α-KG and NADPH, without concomitant production of the D-2-HG, it represents a valuable tool to study the effects of IDH1-dysfunction on cellular metabolism in the absence of this oncometabolite.

Indexed as

AnimalsAstrocytomaBase SequenceBinding SitesBrain NeoplasmsCell Line, TumorGlutaratesHEK293 CellsHeterozygoteHumansIsocitrate DehydrogenaseIsocitratesMiceMutationNADPNeoplasm Gradingalpha-hydroxyglutarateGlutaratesIDH1 protein, humanIsocitrate DehydrogenaseIsocitratesisocitric acidNADP

Identifiers

PMID27460417
PMCPMC4962051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.