ArticleMolecular & cellular proteomics : MCP2016
Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization.
Article in Molecular & cellular proteomics : MCP, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Nutrient content of grass influences microbial communities in the phyllosphere more than climate change.Applied microbiology and biotechnology · 2026Article
- The Alkane 1-Monooxygenase Gene alkB of Pseudomonas sp. FF2 Is Upregulated During Colonisation of Arabidopsis thaliana Leaves.Environmental microbiology reports · 2025Article
- Seasonal dynamics, dietary patterns, and bamboo leaf nutrition shape the phyllosphere-associated gut microbiota of red pandas.Animal microbiome · 2025Article
- Differential Responses of Methylobacterium and Sphingomonas Species to Multispecies Interactions in the Phyllosphere.Environmental microbiology · 2025Article
- Phosphoribosylpyrophosphate synthetase as a metabolic valve advances Methylobacterium/Methylorubrum phyllosphere colonization and plant growth.Nature communications · 2024Article
- Applied microbiology of the phyllosphere.Applied microbiology and biotechnology · 2024Review
- Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Relationships between Phyllosphere Bacterial Communities and Leaf Functional Traits in a Temperate Forest.Plants (Basel, Switzerland) · 2023Article
- Global assembly of microbial communities.mSystems · 2023Article
- Expanding the taxonomic and environmental extent of an underexplored carbon metabolism-oxalotrophy.Frontiers in microbiology · 2023Article
- Dissecting the cotranscriptome landscape of plants and their microbiota.EMBO reports · 2022Article
- Impact of PhyllosphereMicrobiology spectrum · 2022Article
- Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ.Nature communications · 2022Article
- Considerations for constructing a protein sequence database for metaproteomics.Computational and structural biotechnology journal · 2022Review
- Surfactin Stimulated by Pectin Molecular Patterns and Root Exudates Acts as a Key Driver of themBio · 2021Article
- Environmental Factors Influencing Phyllosphere Bacterial Communities in Giant Pandas' Staple Food Bamboos.Frontiers in microbiology · 2021Article
- Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management.Frontiers in microbiology · 2021Article
- A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS.Scientific data · 2020Article
- Multidimensional gene regulatory landscape of a bacterial pathogen in plants.Nature plants · 2020Article
- Adaptive matching between phyllosphere bacteria and their tree hosts in a neotropical forest.Microbiome · 2020Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plants are colonized by a diverse community of microorganisms, the plant microbiota, exhibiting a defined and conserved taxonomic structure. Niche separation based on spatial segregation and complementary adaptation strategies likely forms the basis for coexistence of the various microorganisms in the plant environment. To gain insights into organism-specific adaptations on a molecular level, we selected two exemplary community members of the core leaf microbiota and profiled their proteomes upon Arabidopsis phyllosphere colonization. The highly quantitative mass spectrometric technique SWATH MS was used and allowed for the analysis of over two thousand proteins spanning more than three orders of magnitude in abundance for each of the model strains. The data suggest that Sphingomonas melonis utilizes amino acids and hydrocarbon compounds during colonization of leaves whereas Methylobacterium extorquens relies on methanol metabolism in addition to oxalate metabolism, aerobic anoxygenic photosynthesis and alkanesulfonate utilization. Comparative genomic analyses indicates that utilization of oxalate and alkanesulfonates is widespread among leaf microbiota members whereas, aerobic anoxygenic photosynthesis is almost exclusively found in Methylobacteria. Despite the apparent niche separation between these two strains we also found a relatively small subset of proteins to be coregulated, indicating common mechanisms, underlying successful leaf colonization. Overall, our results reveal for two ubiquitous phyllosphere commensals species-specific adaptations to the host environment and provide evidence for niche separation within the plant microbiota.
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