Evidence map›Paper›PMID 27457653›Full record

ArticleMicrobial ecology2016

Metatranscriptome analysis of active microbial communities in produced water samples from the Marcellus Shale.

Amit Vikram, Daniel Lipus, Kyle Bibby

Abstract read
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Article in Microbial ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Amit VikramDepartment of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Daniel LipusDepartment of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Kyle BibbyDepartment of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, PA, 15261, USA. bibbykj@pitt.edu.ORCID 0000-0003-3142-6090

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Controlling microbial activity is a primary concern during the management of the large volumes of wastewater (produced water) generated during high-volume hydraulic fracturing. In this study we analyzed the transcriptional activity (metatranscriptomes) of three produced water samples from the Marcellus Shale. The goal of this study was to describe active metabolic pathways of industrial concern for produced water management and reuse, and to improve understanding of produced water microbial activity. Metatranscriptome analysis revealed active biofilm formation, sulfide production, and stress management mechanisms of the produced water microbial communities. Biofilm-formation and sulfate-reduction pathways were identified in all samples. Genes related to a diverse array of stress response mechanisms were also identified with implications for biocide efficacy. Additionally, active expression of a methanogenesis pathway was identified in a sample of produced water collected prior to holding pond storage. The active microbial community identified by metatranscriptome analysis was markedly different than the community composition as identified by 16S rRNA sequencing, highlighting the value of evaluating the active microbial fraction during assessments of produced water biofouling potential and evaluation of biocide application strategies. These results indicate biofouling and corrosive microbial processes are active in produced water and should be taken into consideration while designing produced water reuse strategies.

Indexed as

Water MicrobiologyAlginatesBacteriaBase SequenceBiofilmsBiofoulingDisinfectantsDNA, BacterialGene Expression Regulation, BacterialGlucuronic AcidHexuronic AcidsIndustrial MicrobiologyMetabolic Networks and PathwaysMethaneMicrobial ConsortiaOsmotic PressureAlginatesDisinfectantsDNA, BacterialGlucuronic AcidHexuronic AcidsMethaneRNA, Ribosomal, 16SSulfidesWastewaterWaterAlginateBiofilmBiofoulingHydraulic fracturingMetatranscriptomeMethanogenesisProduced waterRNA-seqStress responseSulfate reductionWastewater

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.