Evidence map›Paper›PMID 27457071›Full record

ArticleGenome biology2016

Mapping H4K20me3 onto the chromatin landscape of senescent cells indicates a function in control of cell senescence and tumor suppression through preservation of genetic and epigenetic stability.

David M Nelson, Farah Jaber-Hijazi, John J Cole, Neil A Robertson, Jeffrey S Pawlikowski, Kevin T Norris, Steven W Criscione, Nikolay A Pchelintsev, Desiree Piscitello, Nicholas Stong and 13 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 2 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 2 syntheses or guidelines pooled it, 102 citations in OpenAlex.

  1. Pooled it
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  7. Article
  8. Interrogating the regulatory epigenome of cellular senescence.Cellular and molecular life sciences : CMLS · 2025
    Review
  9. Article
  10. Assessing Large Multimodal Models for One-Shot Learning and Interpretability in Biomedical Image Classification.Advanced intelligent systems (Weinheim an der Bergstrasse, Germany) · 2025
    Article
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 9 institutions in 3 countries.

David M NelsonInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Farah Jaber-HijaziInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
John J ColeInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Neil A RobertsonInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Jeffrey S PawlikowskiInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Kevin T NorrisDivision of Cancer and Genetics, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK.
Steven W CriscioneDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA.
Nikolay A PchelintsevInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Desiree PiscitelloInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Nicholas StongThe Wistar Institute, Philadelphia, PA, 19104, USA.
Taranjit Singh RaiInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Tony McBryanInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK.
Gabriel L OtteEpigenetics Program, Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Colin NixonBeatson Institute for Cancer Research, Glasgow, G61 1BD, UK.
William ClarkBeatson Institute for Cancer Research, Glasgow, G61 1BD, UK.
Harold RiethmanThe Wistar Institute, Philadelphia, PA, 19104, USA.
Hong WuFox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Gunnar SchottaLudwig Maximilians University and Munich Center for Integrated Protein Science (CiPSM), Biomedical Center, Planegg-Martinsried, Germany.
Benjamin A GarciaEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Nicola NerettiDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA.
Duncan M BairdDivision of Cancer and Genetics, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK.
Shelley L BergerEpigenetics Program, Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Peter D AdamsInstitute of Cancer Sciences, University of Glasgow, Glasgow, G61 1BD, UK. p.adams@beatson.gla.ac.uk.
University of Glasgow · GBCancer Research UK Scotland Institute · GBUniversity of Pennsylvania · USBrown University · USCardiff University · GBThe Wistar Institute · USFox Chase Cancer Center · USLudwig-Maximilians-Universität München · DEUniversity of the West of Scotland · GB

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 2008 to 2022
$28.3M
Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2015 to 2024
$17.6M
Training Program in Computational GenomicsT32HG000046 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JUNHYONG KIM, Mingyao Li · 1999 to 2026
$9.5M
TRAINING IN MOLECULAR &CELL BIOLOGY &BIOCHEMISTRYT32GM007601 · NIGMS · BROWN UNIVERSITY · PI MOWRY, KIMBERLY L. · 1985 to 2019
$6.4M
Role of TERRA in Telomere Maintenance and Telomere Stress ResponseR01CA140652 · NCI · WISTAR INSTITUTE · PI LIEBERMAN, PAUL M. · 2010 to 2025
$6.0M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
A novel single-molecule telomere characterization technology for analyzing cancerR21CA177395 · NCI · WISTAR INSTITUTE · PI RIETHMAN, HAROLD, XIAO, MING · 2014 to 2016
$727k
Computational Biology of Transcriptional Networks in AgingK25AG028753 · NIA · BROWN UNIVERSITY · PI NERETTI, NICOLA · 2007 to 2011
$693k
The role of somatic transposition in age-associated genomic instabilityR56AG050582 · NIA · BROWN UNIVERSITY · PI NERETTI, NICOLA, SEDIVY, JOHN M · 2015 to 2015
$568k
Nanomapping-Assisted Analysis of Human Telomere RegionsR21HG007205 · NHGRI · WISTAR INSTITUTE · PI RIETHMAN, HAROLD, XIAO, MING · 2013 to 2014
$467k
Cancer Research UK 16566Cancer Research UK 18246Cancer Research UK C10652/A16566Cancer Research UK C17199/A13490Cancer Research UK C17199/A18246NCI NIH HHS P01 CA196539NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA140652NCI NIH HHS R21 CA177395NHGRI NIH HHS R21 HG007205NHGRI NIH HHS T32 HG000046NIA NIH HHS F31 AG050365NIA NIH HHS K25 AG028753NIA NIH HHS P01 AG031862NIA NIH HHS R56 AG050582NIEHS NIH HHS P30 ES013508NIGMS NIH HHS R01 GM110174NIGMS NIH HHS T32 GM007601
6 · The paper itself

Abstract

backgroundHistone modification H4K20me3 and its methyltransferase SUV420H2 have been implicated in suppression of tumorigenesis. The underlying mechanism is unclear, although H4K20me3 abundance increases during cellular senescence, a stable proliferation arrest and tumor suppressor process, triggered by diverse molecular cues, including activated oncogenes. Here, we investigate the function of H4K20me3 in senescence and tumor suppression.

resultsUsing immunofluorescence and ChIP-seq we determine the distribution of H4K20me3 in proliferating and senescent human cells. Altered H4K20me3 in senescence is coupled to H4K16ac and DNA methylation changes in senescence. In senescent cells, H4K20me3 is especially enriched at DNA sequences contained within specialized domains of senescence-associated heterochromatin foci (SAHF), as well as specific families of non-genic and genic repeats. Altered H4K20me3 does not correlate strongly with changes in gene expression between proliferating and senescent cells; however, in senescent cells, but not proliferating cells, H4K20me3 enrichment at gene bodies correlates inversely with gene expression, reflecting de novo accumulation of H4K20me3 at repressed genes in senescent cells, including at genes also repressed in proliferating cells. Although elevated SUV420H2 upregulates H4K20me3, this does not accelerate senescence of primary human cells. However, elevated SUV420H2/H4K20me3 reinforces oncogene-induced senescence-associated proliferation arrest and slows tumorigenesis in vivo.

conclusionsThese results corroborate a role for chromatin in underpinning the senescence phenotype but do not support a major role for H4K20me3 in initiation of senescence. Rather, we speculate that H4K20me3 plays a role in heterochromatinization and stabilization of the epigenome and genome of pre-malignant, oncogene-expressing senescent cells, thereby suppressing epigenetic and genetic instability and contributing to long-term senescence-mediated tumor suppression.

Indexed as

CarcinogenesisCell Line, TumorCell ProliferationCellular SenescenceChromatinDNA MethylationEpigenesis, GeneticGene Expression Regulation, NeoplasticHeterochromatinHistone-Lysine N-MethyltransferaseHistonesHumansNevusChromatinHeterochromatinHistone-Lysine N-MethyltransferaseHistonesCell senescenceChromatinSUV420H2/H4K20me3Tumor suppression

Identifiers

PMID27457071
PMCPMC4960804
OpenAlexW2488608433

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.